YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3476-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVEISTEK KSNPVKSFIA GGVGGMCNVL VGHPLDTIKV RLQTMPTPPP GQPPRYKGVI  60
   61 DCAARTFRYE GFRGFYRGIS APLVGVTPIY AVDFAVYAAG KRLFQTDDHI RLTYPQIFAA 120
  121 GALAGVCSAL VTVPTDRIKV LLQTQTVSNG PLLYNGTIDT AAKLYRQGGI RSLFKGTCAC 180
  181 ILRDSPTGFY FVTYEFLQEL ARKKSANGKI STTSTILSGG TAGIVFWTLA VPFDVLKSRL 240
  241 QSAPEGTYKH GIRSVFRNLM ATEGPKALFR GILPILLRAF PSTAAVFFGV ELTNDLLKA

Type	Start	End	Confidence
Cytoplasmic	1	73	0.87
Transmembrane Helix	74	97	0.78
Non-Cytoplasmic	98	111	0.84
Transmembrane Helix	112	133	0.84
Cytoplasmic	134	209	0.91
Transmembrane Helix	210	231	0.82
Non-Cytoplasmic	232	299	0.67