YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp26F-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.95
Transmembrane Helix	66	86	0.90
Non-Cytoplasmic	87	106	0.80
Transmembrane Helix	107	127	0.90
Cytoplasmic	128	135	0.91
Transmembrane Helix	136	157	0.92
Non-Cytoplasmic	158	208	0.94
Transmembrane Helix	209	231	0.87
Cytoplasmic	232	243	0.89
Transmembrane Helix	244	268	0.86
Non-Cytoplasmic	269	289	0.96
Transmembrane Helix	290	314	0.88
Cytoplasmic	315	360	0.94
Transmembrane Helix	361	383	0.89
Non-Cytoplasmic	384	398	0.88
Transmembrane Helix	399	421	0.92
Cytoplasmic	422	430	0.91
Transmembrane Helix	431	453	0.89
Non-Cytoplasmic	454	563	0.97
Transmembrane Helix	564	586	0.87
Cytoplasmic	587	603	0.87
Transmembrane Helix	604	623	0.80
Non-Cytoplasmic	624	653	0.82
Transmembrane Helix	654	677	0.92
Cytoplasmic	678	692	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEATIELDS SIAVAPKCSN VNNNNSARSS RVGSSISGPD SDAECQRFGW CGWNPAWLQR  60
   61 FCTAKWALFW LCWGGALQGL IVNGLINVSI STIERRFGLR SRQMGLVASG YDLASFACLV 120
  121 PVTYYGGRRG ASKPRFIAIG LIVMGMGSLV FLLPNFLVGN YRATIAEANV CETTGLPFNS 180
  181 NSSQSMTACE LNAMGEGQSE NLTWTVWLFL AAQLLHGAGA SPLFTLGVTY IDENVSKKMS 240
  241 SVYLGIYYTM ATVGPAIGYV FGGQLLLIYT DWMTVDPVQL SLTSDSKVWI GAWWLGFIFA 300
  301 AAMCLLIALP IFGYPKLLPG AEKLQLERVS EAHATISEAD DSSNVVRGLP RAVLSLLANP 360
  361 TFFFLNLAGA TEGLVIAGFA AFLPKQIENQ FSISPMYSAL VMGLITVPAG GGGTFLGGYL 420
  421 VKKWNLACRG IIKMCLLATT VAALFTICFL VSCPNPKFAG VTTGYKMQPS SDSPALVASC 480
  481 NSNCGCSRTN YDPICGVDGV MYYSPCYAGC VQEEHANSLK RYHNCSCIEQ VGFVDDGNPS 540
  541 SEAPHFRPDA TNRKCDSTCQ TLPLFVALCF ILMVFTFLAT MPALSATLRC VQDDQRSFAL 600
  601 GLQWIKVRLL GTIPAPLIFG ALIDESCILW QESCDKDAGG ACLVYDNFYI SRYMWLLALI 660
  661 CKLGSVVFFA CAWWFYVPPS KPLNANGKED VN