YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Sec61alpha-PA, F...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	54	0.94
Non-Cytoplasmic	55	75	0.92
Transmembrane Helix	76	97	0.87
Cytoplasmic	98	114	0.86
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	142	0.82
Transmembrane Helix	143	165	0.94
Cytoplasmic	166	172	0.90
Transmembrane Helix	173	193	0.89
Non-Cytoplasmic	194	203	0.69
Transmembrane Helix	204	221	0.70
Cytoplasmic	222	240	0.72
Transmembrane Helix	241	261	0.92
Non-Cytoplasmic	262	282	0.75
Transmembrane Helix	283	304	0.83
Cytoplasmic	305	315	0.61
Transmembrane Helix	316	336	0.72
Non-Cytoplasmic	337	358	0.86
Transmembrane Helix	359	380	0.87
Cytoplasmic	381	412	0.96
Transmembrane Helix	413	433	0.87
Non-Cytoplasmic	434	439	0.62
Transmembrane Helix	440	458	0.90
Cytoplasmic	459	476	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKFLEVIK PFCSILPEIA KPERKIQFRE KVLWTAITLF IFLVCCQIPL FGIMSSDSAD  60
   61 PFYWIRVILA SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG 120
  121 MVITIGQAIV YVMTGMYGDP SEIGAGVCLL IIIQLFAAGL IVLLLDELLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPTT VTTGRGTEFE GAVIALFHLM ATRNDKVRAL REAFYRQNLP 240
  241 NLMNLLATVL VFAVVIYFQG FRVDLPIKSA RYRGQYSSYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLAV KFQGNFFINL LGVWADVGGG GPARSYPIGG LCYYLSPPES VGHILTDPIH 360
  361 ALLYIVFMLG SCAFFSKTWI DVSGSSAKDV AKQLKEQHMV MRGHRENSMI HELNRYIPTA 420
  421 AAFGGLCIGA LSVMADFLGA IGSGTGILLA VTIIYQYFEI FVKEQSEMGG MGTLLF