YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ifc-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKVSRTDF EWVYTEEPHA SRRKIILEKY PQIKKLFGHD PNFKWVAGAM VLTQILALFV  60
   61 VKDLSWSWLI VAAYCFGGII NHSLMLAVHE ISHNLAFGHS RPMHNRILGF ICNLPIGLPM 120
  121 SISFKKYHLE HHRYQGDEAI DTDIPTLLEA RLFDTTFGKF LWVCLQPFFY IFRPLIINPK 180
  181 PPTRLEIINT VVQLTFNALI VYFLGWKPLA YLLIGSILAM GLHPVAGHFI SEHYMFAKGF 240
  241 ETYSYYGPLN WITFNVGYHN EHHDFPAVPG SRLPEVKRIA KEFYDTMPQH TSWTRVLYDF 300
  301 IMDPAVGPYA RVKRRQRGLA S

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	61	0.87
Non-Cytoplasmic	62	67	0.71
Transmembrane Helix	68	88	0.91
Cytoplasmic	89	105	0.78
Transmembrane Helix	106	124	0.86
Non-Cytoplasmic	125	155	0.80
Transmembrane Helix	156	177	0.72
Cytoplasmic	178	184	0.80
Transmembrane Helix	185	204	0.75
Non-Cytoplasmic	205	209	0.65
Transmembrane Helix	210	230	0.89
Cytoplasmic	231	321	0.86