YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14040-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.86
Transmembrane Helix	13	32	0.94
Non-Cytoplasmic	33	43	0.80
Transmembrane Helix	44	66	0.86
Cytoplasmic	67	83	0.93
Transmembrane Helix	84	104	0.90
Non-Cytoplasmic	105	113	0.73
Transmembrane Helix	114	133	0.93
Cytoplasmic	134	141	0.84
Transmembrane Helix	142	159	0.72
Non-Cytoplasmic	160	201	0.74
Transmembrane Helix	202	226	0.80
Cytoplasmic	227	235	0.75
Transmembrane Helix	236	257	0.82
Non-Cytoplasmic	258	272	0.70
Transmembrane Helix	273	296	0.88
Cytoplasmic	297	305	0.64
Transmembrane Helix	306	325	0.79
Non-Cytoplasmic	326	326	0.35
Transmembrane Helix	327	351	0.61
Cytoplasmic	352	388	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNWRELFP TKLTFVIFLL YMSLFIGQGI FVTASQESNN SYGYNTVTVV LLTEVFKLIV  60
   61 STCLYCRDNN LRSLVRDVQK DRNVLGLYMV PAFLYCLYNN LAFVNLATFD PTTYYLLLQL 120
  121 RVVVTGILFQ IIFKKYLSQR QWISLILLTL GCMMKQVDFG SFYSDANDDS ESAAIQQQLQ 180
  181 SHNKTTSAET HAHGKNMSGF DFSLSAVFIL AQTICSCLAG VYNEYLLKDK GADVNIFVQN 240
  241 VFMYLDSIVC NAVILLLRGE LLDAFSPQNL GSIMRFSVLI IIVNNAAIGI VTSFFLKYMN 300
  301 SILKTFASAL ELLFTAVLCY FLFSIPIYMN TALAIAVVSY AIYLYTQSPV VNLGKVRPLS 360
  361 NLSDATTKST DKRKLIDEEA AESDLDMV