YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8885-PA
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSLQRLVG SCRRWAQQPA IRHYAAPADS TKGKGPISWR SLAVIGALGA GGVGFMLYVK  60
   61 SEKDEARMKE RQRQLGKAAI GGSWELVDSQ GAVRKSEDFL GKWLLIYFGF THCPDICPDE 120
  121 LEKMAAVVDE VEKSPQTPAV QPIFITVDPE RDSKEVVAKY VKEFSPKLLG LTGTVEQIRK 180
  181 VCKAFRVYFS AGPRDEDNDY IVDHTIIMYL VNPDGEFVDY YGQNRDKDQC VASILVNIAK 240
  241 WNSMNKKGWF S

Type	Start	End	Confidence
Cytoplasmic	1	36	0.43
Transmembrane Helix	37	59	0.79
Non-Cytoplasmic	60	251	0.55