YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hoe2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	170	0.56
Transmembrane Helix	171	191	0.62
Cytoplasmic	192	335	0.83
Transmembrane Helix	336	358	0.87
Non-Cytoplasmic	359	364	0.72
Transmembrane Helix	365	383	0.88
Cytoplasmic	384	398	0.82
Transmembrane Helix	399	419	0.89
Non-Cytoplasmic	420	436	0.76
Transmembrane Helix	437	461	0.84
Cytoplasmic	462	476	0.76
Transmembrane Helix	477	497	0.81
Non-Cytoplasmic	498	519	0.85
Transmembrane Helix	520	542	0.89
Cytoplasmic	543	628	0.99
Transmembrane Helix	629	649	0.94
Non-Cytoplasmic	650	655	0.80
Transmembrane Helix	656	674	0.94
Cytoplasmic	675	686	0.84
Transmembrane Helix	687	709	0.66
Non-Cytoplasmic	710	728	0.59
Transmembrane Helix	729	757	0.76
Cytoplasmic	758	762	0.40
Transmembrane Helix	763	788	0.55
Non-Cytoplasmic	789	789	0.27
Transmembrane Helix	790	805	0.66
Cytoplasmic	806	819	0.60
Transmembrane Helix	820	843	0.87
Non-Cytoplasmic	844	846	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRDTIRNL RPASPGREKS SGIELQQRSP RGACHHNQVA AVQVTEQSLQ VWRALPAEIR  60
   61 HDPSMASFQM ENERIHGSSG GATDDEDEDG YEEVDMKNVS RIQDEPGSSF AGSDFLDIKN 120
  121 RPGDENATDD EVTTHSDHEA ANGGPGNAKS QARRIHHKSK RSKEQRQRDK LWKRGGLLVF 180
  181 WILSAVVLIS VGEKHLLEKT IDVPMGEEGK FFKLLQKPTG DFRLKIHGAF RELSTLDAPE 240
  241 NETLSFGFLT VQPQVSTYIG ENHSQVFQDI LPAWRLPLLS EEELMLRAPA VTTNRTYQMT 300
  301 QELDEMLAGK NSEFRLHIYS DVEVDLAIVL NYNPLIVNAR TGSILAGVIL LIFYALLVWE 360
  361 LFERTFVAMI CSILSVTTLA CFNDRPNMDE IIQWMDMELL TLLFCMMLLI LILTETGVFD 420
  421 YLAVFCFEIS GGKIWPMIYS LCLVTCLVSS VLDNMTTVLL LTPVAIRLCE VMQLDPLPVV 480
  481 MGIIVHANIG GALTPIGDPI SIIVSTNHFI VDNDVTFPTF VAHTFPGVIL AVIQSCVYLR 540
  541 LFYHNIDALR LNEPKEMSEL RREMKVWQRA LNAVASCSKD AQLVRGTLQA KIKQLKRTLR 600
  601 RLQKGVGSTE VYTNTLDELK QKYPIKNKTL LLQSAGALLF VIVCFFIQSV PHWRTLPLGW 660
  661 VALLGVILLL IILNRDDMEH LMHRIEWTTL LFFAAMFVMM ECVERLGIFA CISELTEHVI 720
  721 LSVGKSHRLA MAIFMILWMS ALASSILDSI PVAAIMVKLV TSLVAKPSLG LPLQPLVWAL 780
  781 TLGASMGGNG TLYGASANVI AAGIAEQHGY KLSFTRYLRT VFPMMLGQIT LMTVYLLVAH 840
  841 VVFEWH