YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hoe1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.96
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	165	0.86
Transmembrane Helix	166	182	0.69
Cytoplasmic	183	297	0.82
Transmembrane Helix	298	315	0.85
Non-Cytoplasmic	316	321	0.69
Transmembrane Helix	322	340	0.92
Cytoplasmic	341	354	0.69
Transmembrane Helix	355	375	0.84
Non-Cytoplasmic	376	389	0.83
Transmembrane Helix	390	411	0.88
Cytoplasmic	412	426	0.76
Transmembrane Helix	427	449	0.85
Non-Cytoplasmic	450	472	0.89
Transmembrane Helix	473	493	0.92
Cytoplasmic	494	586	0.99
Transmembrane Helix	587	606	0.95
Non-Cytoplasmic	607	612	0.84
Transmembrane Helix	613	632	0.91
Cytoplasmic	633	643	0.82
Transmembrane Helix	644	666	0.87
Non-Cytoplasmic	667	685	0.85
Transmembrane Helix	686	709	0.86
Cytoplasmic	710	732	0.71
Transmembrane Helix	733	754	0.82
Non-Cytoplasmic	755	776	0.67
Transmembrane Helix	777	800	0.85
Cytoplasmic	801	803	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYNPNSSAE DNAYEDDEVT EGALQVWRTL PERIRQDPSL ASFRQEHERL HGDVDQLHAE  60
   61 ESELRVQNGH HEETALANQP FTQIGINVTN EAGQVRVLDG RDLENNNDDQ HDEAEPHAKS 120
  121 LIRKYLIWFK IAILLVVWCV FTAFLMSNNE HVDQLSLISV PRNSSPRVFP IATASLQRIG 180
  181 LGLRGPFRLQ ENELAINASV PLPLLQVQVM RSYFDGEGME IYIENASQVW QLDVVYPDLI 240
  241 DATRDTKKQR TFELSPTDPL WLAQANRTEL SFEFTSSIEG ELPLQLNVDE SPIYKRDGVI 300
  301 YAAAVLCGLY VMIIWEIVNR TFAAIIASTL SVGILAALNS RPSMATIMGW IDVETLLLLF 360
  361 GMMILVAILS ETGVFDYLAV YAYKITNGHV WPLINCLCLF TAVLSSFLDN VTTVLLMTPV 420
  421 TIRLCEVMCL NPVPILMCMV IYSNIGGALT PVGDPPNVII ASNSYISKNG VNFAVFTLHM 480
  481 LPGVLLVMVQ TYIQLRFKFR NISDLQFKDS PEVEELRHEI HVWKRAAASL SAYSKDEELV 540
  541 RQTLMKKVNR LKRSLKKRMT AVIEPAPNYQ QTLANLQAKY PIRNKPLLIK CSAALVFVIS 600
  601 LFFLHSVPEL QRLSLGWTAL LGAIFLIILA DIEDMEAILA RVEWSTLLFF AALFILMEAL 660
  661 TELGLIEWIG NMTEGIILGV GEDRRLMVAI LIILWVSAVA SAFVDNIPLT TMMVKITISL 720
  721 AQNSTLNLPL QPLVWALALG ACLGGNGTLI GASANVVCAG VAEQHGYKFT FLQFFKVGFP 780
  781 IMIGSIIVTT GYLLVSHSLF AWH