YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hoe1-PB, hoe1-PD...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	134	0.95
Transmembrane Helix	135	155	0.95
Non-Cytoplasmic	156	174	0.85
Transmembrane Helix	175	191	0.69
Cytoplasmic	192	306	0.82
Transmembrane Helix	307	324	0.85
Non-Cytoplasmic	325	330	0.69
Transmembrane Helix	331	349	0.92
Cytoplasmic	350	363	0.69
Transmembrane Helix	364	384	0.84
Non-Cytoplasmic	385	398	0.83
Transmembrane Helix	399	420	0.88
Cytoplasmic	421	435	0.76
Transmembrane Helix	436	458	0.85
Non-Cytoplasmic	459	481	0.89
Transmembrane Helix	482	502	0.92
Cytoplasmic	503	595	0.99
Transmembrane Helix	596	615	0.95
Non-Cytoplasmic	616	621	0.84
Transmembrane Helix	622	641	0.91
Cytoplasmic	642	652	0.82
Transmembrane Helix	653	675	0.87
Non-Cytoplasmic	676	694	0.85
Transmembrane Helix	695	718	0.86
Cytoplasmic	719	741	0.71
Transmembrane Helix	742	763	0.82
Non-Cytoplasmic	764	785	0.67
Transmembrane Helix	786	809	0.85
Cytoplasmic	810	812	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKVAKRLW FHRQASTKSD RFPQPNEVTE GALQVWRTLP ERIRQDPSLA SFRQEHERLH  60
   61 GDVDQLHAEE SELRVQNGHH EETALANQPF TQIGINVTNE AGQVRVLDGR DLENNNDDQH 120
  121 DEAEPHAKSL IRKYLIWFKI AILLVVWCVF TAFLMSNNEH VDQLSLISVP RNSSPRVFPI 180
  181 ATASLQRIGL GLRGPFRLQE NELAINASVP LPLLQVQVMR SYFDGEGMEI YIENASQVWQ 240
  241 LDVVYPDLID ATRDTKKQRT FELSPTDPLW LAQANRTELS FEFTSSIEGE LPLQLNVDES 300
  301 PIYKRDGVIY AAAVLCGLYV MIIWEIVNRT FAAIIASTLS VGILAALNSR PSMATIMGWI 360
  361 DVETLLLLFG MMILVAILSE TGVFDYLAVY AYKITNGHVW PLINCLCLFT AVLSSFLDNV 420
  421 TTVLLMTPVT IRLCEVMCLN PVPILMCMVI YSNIGGALTP VGDPPNVIIA SNSYISKNGV 480
  481 NFAVFTLHML PGVLLVMVQT YIQLRFKFRN ISDLQFKDSP EVEELRHEIH VWKRAAASLS 540
  541 AYSKDEELVR QTLMKKVNRL KRSLKKRMTA VIEPAPNYQQ TLANLQAKYP IRNKPLLIKC 600
  601 SAALVFVISL FFLHSVPELQ RLSLGWTALL GAIFLIILAD IEDMEAILAR VEWSTLLFFA 660
  661 ALFILMEALT ELGLIEWIGN MTEGIILGVG EDRRLMVAIL IILWVSAVAS AFVDNIPLTT 720
  721 MMVKITISLA QNSTLNLPLQ PLVWALALGA CLGGNGTLIG ASANVVCAGV AEQHGYKFTF 780
  781 LQFFKVGFPI MIGSIIVTTG YLLVSHSLFA WH