YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hoe1-PC, FBpp0311695
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	168	0.92
Transmembrane Helix	169	189	0.95
Non-Cytoplasmic	190	208	0.83
Transmembrane Helix	209	225	0.67
Cytoplasmic	226	340	0.83
Transmembrane Helix	341	358	0.85
Non-Cytoplasmic	359	364	0.69
Transmembrane Helix	365	383	0.92
Cytoplasmic	384	397	0.69
Transmembrane Helix	398	418	0.84
Non-Cytoplasmic	419	432	0.83
Transmembrane Helix	433	454	0.88
Cytoplasmic	455	469	0.76
Transmembrane Helix	470	492	0.85
Non-Cytoplasmic	493	515	0.89
Transmembrane Helix	516	536	0.92
Cytoplasmic	537	629	0.99
Transmembrane Helix	630	649	0.95
Non-Cytoplasmic	650	655	0.84
Transmembrane Helix	656	675	0.91
Cytoplasmic	676	686	0.82
Transmembrane Helix	687	709	0.87
Non-Cytoplasmic	710	728	0.85
Transmembrane Helix	729	752	0.86
Cytoplasmic	753	775	0.71
Transmembrane Helix	776	797	0.82
Non-Cytoplasmic	798	819	0.67
Transmembrane Helix	820	843	0.85
Cytoplasmic	844	846	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPYGYSKP TFMITDHTRD PYHLQPGDDD DDRDEDEERQ TKLQEIISWL HLNAKHRSKC  60
   61 EVTEGALQVW RTLPERIRQD PSLASFRQEH ERLHGDVDQL HAEESELRVQ NGHHEETALA 120
  121 NQPFTQIGIN VTNEAGQVRV LDGRDLENNN DDQHDEAEPH AKSLIRKYLI WFKIAILLVV 180
  181 WCVFTAFLMS NNEHVDQLSL ISVPRNSSPR VFPIATASLQ RIGLGLRGPF RLQENELAIN 240
  241 ASVPLPLLQV QVMRSYFDGE GMEIYIENAS QVWQLDVVYP DLIDATRDTK KQRTFELSPT 300
  301 DPLWLAQANR TELSFEFTSS IEGELPLQLN VDESPIYKRD GVIYAAAVLC GLYVMIIWEI 360
  361 VNRTFAAIIA STLSVGILAA LNSRPSMATI MGWIDVETLL LLFGMMILVA ILSETGVFDY 420
  421 LAVYAYKITN GHVWPLINCL CLFTAVLSSF LDNVTTVLLM TPVTIRLCEV MCLNPVPILM 480
  481 CMVIYSNIGG ALTPVGDPPN VIIASNSYIS KNGVNFAVFT LHMLPGVLLV MVQTYIQLRF 540
  541 KFRNISDLQF KDSPEVEELR HEIHVWKRAA ASLSAYSKDE ELVRQTLMKK VNRLKRSLKK 600
  601 RMTAVIEPAP NYQQTLANLQ AKYPIRNKPL LIKCSAALVF VISLFFLHSV PELQRLSLGW 660
  661 TALLGAIFLI ILADIEDMEA ILARVEWSTL LFFAALFILM EALTELGLIE WIGNMTEGII 720
  721 LGVGEDRRLM VAILIILWVS AVASAFVDNI PLTTMMVKIT ISLAQNSTLN LPLQPLVWAL 780
  781 ALGACLGGNG TLIGASANVV CAGVAEQHGY KFTFLQFFKV GFPIMIGSII VTTGYLLVSH 840
  841 SLFAWH