YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0307796, CG3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	38	0.91
Non-Cytoplasmic	39	87	0.89
Transmembrane Helix	88	109	0.79
Cytoplasmic	110	119	0.85
Transmembrane Helix	120	141	0.88
Non-Cytoplasmic	142	146	0.66
Transmembrane Helix	147	172	0.81
Cytoplasmic	173	182	0.83
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	209	0.71
Transmembrane Helix	210	230	0.89
Cytoplasmic	231	267	0.89
Transmembrane Helix	268	290	0.89
Non-Cytoplasmic	291	314	0.83
Transmembrane Helix	315	334	0.74
Cytoplasmic	335	348	0.77
Transmembrane Helix	349	369	0.93
Non-Cytoplasmic	370	375	0.68
Transmembrane Helix	376	397	0.80
Cytoplasmic	398	405	0.60
Transmembrane Helix	406	430	0.83
Non-Cytoplasmic	431	441	0.64
Transmembrane Helix	442	462	0.94
Cytoplasmic	463	493	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTEKGGLQ RVRNFLSCRQ VLNLLTMLGF MLNYALRVNL TIAIVDMVRP NVTSAVNATL  60
   61 VGNSTAANST ASPDGVDVYE ERFPWDSYQT NFVLGCFFWG YILTELPGGR LAELIGGRRV 120
  121 FGHSMLWASL LTLITPLAAH INYVVLIVVR VVLGFMLGAS WPAIHPVAAV WIPPMERSKF 180
  181 MSNMMASSLG AAITMPICGY LISVAGWASV FYLTGAVGLL WSLAWFTFVY ETPATHPRIS 240
  241 AEERREIEEA IGTTTSKKRP SHVPWGQLLC SPAVWAIIIC HGLAVFGFFT VVNQLPTFMS 300
  301 KILHFDIKQN GLFSSLPYLG KYVMAVASSY LADYLRKKGT LSTTATRKLF TTFALVIPGL 360
  361 LMIVQVFLGY DATWSVTIFS LALFAHGAVT AGYLGNGLDI APNFGGTIFG LANTLSSFGG 420
  421 FLSTSMVGAL TYKDQSFHSW QIVFWILAAT YISAAVVFAI LGSGELQPWN NPPERVRISD 480
  481 VTQEEGVPLK NEK