YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15438-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.98
Transmembrane Helix	28	47	0.89
Non-Cytoplasmic	48	65	0.81
Transmembrane Helix	66	86	0.86
Cytoplasmic	87	94	0.85
Transmembrane Helix	95	115	0.95
Non-Cytoplasmic	116	122	0.75
Transmembrane Helix	123	143	0.88
Cytoplasmic	144	161	0.84
Transmembrane Helix	162	184	0.93
Non-Cytoplasmic	185	191	0.80
Transmembrane Helix	192	212	0.94
Cytoplasmic	213	251	0.96
Transmembrane Helix	252	273	0.93
Non-Cytoplasmic	274	286	0.85
Transmembrane Helix	287	308	0.85
Cytoplasmic	309	345	0.70
Transmembrane Helix	346	367	0.86
Non-Cytoplasmic	368	379	0.57
Transmembrane Helix	380	403	0.86
Cytoplasmic	404	410	0.55
Transmembrane Helix	411	435	0.85
Non-Cytoplasmic	436	439	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKLKYSLL RGELVDTQSI WTRHEKRVWF ITLITGTCML YSTRTTMPLL VPAVASAQKW  60
   61 SKTDSGTVLS SFFWGYTLTQ VVGGYFSDRF GGQRVILFAA IGWSLITFLM PTIIWTAGSI 120
  121 KSYAIPFIVA IRILNGALQG VHFPSMISLT SQNLCPNERS SFFGLLTAGS ALGTLLTGIM 180
  181 GSFLLDYFGW SYVFRVIGLM GIAWALVLRY YAMAGERNRI INIATPSRLC ANKSPAETSA 240
  241 VPWLRYFRRL SFWACVLTHA CEMNCFFVLL SWLPTYFHDG FPHAKGWVVN MIPWLALPPC 300
  301 TLFAKYLTTR LLAREWHTTT VRKVIQSCCF AAQNLALFVM SRTSDFHTAL ICMTIIIGGT 360
  361 GFHNNAVTVN PQDLAPLHSG SVFGLMNTVG AIPGFLGVYL AGHILELTQS WPMVFSAAAG 420
  421 INLVGWIIFI VFGSAEAIV