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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: fred-PA
Protein type: Transmembrane
Type Confidence: 0.52
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLCQLWLS IGLISGDDSL DTREGVDLVL KCRFTEHYDS TDFTFYWARW TCCPTLFENV  60
   61 AIGDVQLNSN YRLDFRPSRG IYDLQIKNTS YNRDNGRFEC RIKAKGTGAD VHQEFYNLTV 120
  121 LTAPHPPMVT PGNLAVATEE KPLELTCSSI GGSPDPMITW YREGSTVPLQ SYALKGGSKN 180
  181 HYTNATLQIV PRRADDGAKY KCVVWNRAMP EGHMLETSVT LNVNYYPRVE VGPQNPLKVE 240
  241 RDHVAKLDCR VDAKPMVSNV RWSRNGQYVS ATPTHTIYRV NRHHAGKYTC SADNGLGKTG 300
  301 EKDIVLDVLY PPIVFIESKT HEAEEGETVL IRCNVTANPS PINVEWLKEG APDFRYTGEL 360
  361 LTLGSVRAEH AGNYICRSVN IMQPFSSKRV EGVGNSTVAL LVRHRPGQAY ITPNKPVVHV 420
  421 GNGVTLTCSA NPPGWPVPQY RWFRDMDGDI GNTQKILAQG PQYSIPKAHL GSEGKYHCHA 480
  481 VNELGIGKIA TIILEVHQPP QFLAKLQQHM TRRVGDVDYA VTCSAKGKPT PQIRWIKDGT 540
  541 EILPTRKMFD IRTTPTDAGG GVVAVQSILR FRGKARPNGN QLLPNDRGLY TCLYENDVNS 600
  601 ANSSMHLRIE HEPIVIHQYN KVAYDLRESA EVVCRVQAYP KPEFQWQYGN NPSPLTMSSD 660
  661 GHYEISTRME NNDVYTSILR IAHLQHSDYG EYICRAVNPL DSIRAPIRLQ PKGSPEKPTN 720
  721 LKILEVGHNY AVLNWTPGFN GGFMSTKYLV SYRRVATPRE QTLSDCSGNG YIPSYQISSS 780
  781 SSNSNHEWIE FNCFKENPCK LAPLDQHQSY MFKVYALNSK GTSGYSNEIL ATTKVSKIPP 840
  841 PLHVSYDPNS HVLGINVAAT CLSLIAVVES LVTRDATVPM WEIVETLTLL PSGSETTFKE 900
  901 AIINHVSRPA HYTTATTSGR SLGVGGGSHL GEDRTMALAE TAGPGPVVRV KLCLRSNHEH 960
  961 CGAYANAEIG KSYMPHKSSM TTSALVAIII ASLSFVVFLG LLYAFCHCRR KHAAKKESSS1020
 1021 VGGGVGGGNA NATANPGSTG AKEYDLDLDA SRRPSLSQDP QQSQQQPPPP PPYYPTGTLD1080
 1081 SKDIGNGNGG MELTLTALHD PDEQLNMQQQ QHHSNHGQYQ QPKAILGIYG GVAGSGGNNS1140
 1141 GGQHPHSNGY GYHVTSAIGV DSDSYQVLPS VANSAAGSHG HGSGHGHGLG AGE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle