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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgant4-PA
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAVSILDFR RQDVHMAIKK RYVKRLLRKV VLLLVVIVTV SLVTTLVVER RMKNAAELTE  60
   61 QLDPNGDPIT PVFRAANIHP TRKAPRPPFQ DRNSVVDIPR SDKLQGFRLP EPKGERKDWH 120
  121 DYAAMEADRK RSGFGEHGVA VKIENPDEKQ LEKEHYEMNG FNGLISDRIS VNRSVPDLRL 180
  181 EACKTRKYLA KLPNISVIFI FFNEHFNTLL RSIYSVINRT PPELLKQIVL VDDGSEWDVL 240
  241 KQPLDDYVQQ HFPHLVTIVR NPERQGLIGA RIAGAKVAVG QVMVFFDSHI EVNYNWLPPL 300
  301 IEPIAINPKI STCPMVDTIS HEDFSYFSGN KDGARGGFDW KMLYKQLPVL PEDALDKSMP 360
  361 YRSPVMMGGL FAINTDFFWD LGGYDDQLDI WGGEQYELSF KIWMCGGMLL DVPCSRVAHI 420
  421 FRGPMKPRGN PRGHNFVAKN HKRVAEVWMD EYKQYVYKRD PKTYDNLDAG DLTRQRGVRE 480
  481 RLKCKSFHWF MTEVAPDFLV KFPPVEPPSY AAGIIQNVAN PVYCLDNMGK STEEAVGMFS 540
  541 CADNRTHPQP NQFWELSIFR DLRMKGFDSV CLDVHEGPPN ATVWMWSCHS QGGNQFWYYD 600
  601 RQTQRLVHGE NNKRCLEGFV ENGIAKVVAN SCENGNDRQR WEFGFVNHTM LDTFYDGLK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle