YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15408-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.96
Non-Cytoplasmic	42	63	0.93
Transmembrane Helix	64	86	0.91
Cytoplasmic	87	93	0.85
Transmembrane Helix	94	112	0.96
Non-Cytoplasmic	113	118	0.79
Transmembrane Helix	119	140	0.92
Cytoplasmic	141	149	0.87
Transmembrane Helix	150	171	0.93
Non-Cytoplasmic	172	177	0.79
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	269	0.98
Transmembrane Helix	270	290	0.89
Non-Cytoplasmic	291	307	0.85
Transmembrane Helix	308	328	0.91
Cytoplasmic	329	334	0.87
Transmembrane Helix	335	355	0.93
Non-Cytoplasmic	356	372	0.83
Transmembrane Helix	373	394	0.89
Cytoplasmic	395	404	0.81
Transmembrane Helix	405	426	0.92
Non-Cytoplasmic	427	433	0.78
Transmembrane Helix	434	454	0.96
Cytoplasmic	455	466	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMRLFQRPN CLLNRRNRYQ LLTTLLINVI SISHGIGIGW LSPTLRKLQS DSPAGFEVKS  60
   61 EFEISWVGSM LGMGSVTGNI LIGCLLGRLG SKRCLLLIAI PHSCFWILVY FAQSVEYLYV 120
  121 GRLLAGICGG GMYIVHPILL SEIADANIRG TFSAMVMLSV NVGILVGYII GTHLPYYSIP 180
  181 LMVLILPLWY LISVLLFIKE SPMHLIRIGK YSAAERSFRY YKNIKDSDNI HDQNRAMEEF 240
  241 EIMKIALTKG DALQDAVTFK DFYSRPALKA YGPALVLLIA NQFSGLFTMV NYMSDIFANS 300
  301 GSTMDPDTCT IIIGAVQILG TYVTTLLCDI CGRKLLMLVS TGGVAISLTA FGFFTKYAES 360
  361 HNIGEYSWIP LLLMSMDIFL GNIGLVGCFF VSLVEMFPVK IRAKAASMAI VVCSIFVFLM 420
  421 LNIFPICMKQ WGISATMWSC AGVTALSSLY FTYFMKETKG KSMLDD