YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220956328, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTTFVKPS NGGGDSGGGG DADGGGQKLQ FWKHVEYIEN HGKQEDDYEY CMTEFLRMSG  60
   61 IYWGTTALDI MGQLERLERK SIIEFVKRCQ CPNTGGFAPC EGHDPHLLYT LSAIQILCTY 120
  121 DALEEIDREA VVRFVVGLQQ PDGSFFGDKW GEVDTRFSFC AVASLTLLGR MEQTIDVEKA 180
  181 VKFVLSCCNQ TDGGFGSKPG AESHAGLIYC CVGFFSLTHR LHLLDVDKLG WWLCERQLPS 240
  241 GGLNGRPEKL PDVCYSWWVL ASLTIMGRLH WISSEKLQQF ILSCQDTETG GFSDRTGNMP 300
  301 DIFHTLFGIG GLSLLGHSGL KAINPTLCMP QYIIDRLGIK PQLLPRP

Type	Start	End	Confidence
Cytoplasmic	1	252	0.53
Transmembrane Helix	253	272	0.60
Non-Cytoplasmic	273	347	0.57