YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220945796, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIEERFQA AVNVIKGLPK NGPYQPSTSM MLKFYGLFKQ ATEGRPDVDK KPGFWDIVGK  60
   61 AKWQAWNDNR HLTKEEAMQR YVESLQEIIE TMSFTENVQN FVGSLDSLGN ISLDELELVS 120
  121 PGMKELAESH PNSPFHSRTN SPQHGSSCNG EPEPEPQATS TAPLATSETI KENGHSSPPL 180
  181 TNGYGPKPTA SYTQHDTHNF TSNSSVAIVD PSDDEYDDPY DLSHELTQAI GQNTDLLRQI 240
  241 QAAITRMNSD VGAVQQRVRS LEQSLNELRS GQKAAKGTVA QPRSLPAWWP FRNISPLWFA 300
  301 VLILWPFLVR RFARMLQSNP QRRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.94
Transmembrane Helix	288	309	0.83
Cytoplasmic	310	324	0.81