YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	colt-PD, colt-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTENVSTE RKANPVKSFL TGGFGGICNV LSGHPLDTIK VRLQTMPRPA PGEQPLYRGT  60
   61 FDCAAKTIKN EGVRGLYKGM SAPLTGVAPI FAMCFAGYAL GKRLQQRGED AKLTYPQIFV 120
  121 AGSFSGLFST LIMAPGERIK VLLQTQQGQG GERKYNGMID CAGKLYKEGG LRSVFKGSCA 180
  181 TMLRDLPANG LYFLVYEALQ DVAKSKSETG QISTASTIFA GGVAGMAYWI LGMPADVLKS 240
  241 RLQSAPEGTY KHGIRSVFKD LIVKDGPLAL YRGVTPIMLR AFPANAACFF GIELANKFFN 300
  301 IVAPNF

Type	Start	End	Confidence
Cytoplasmic	1	18	0.82
Transmembrane Helix	19	36	0.45
Non-Cytoplasmic	37	79	0.52
Transmembrane Helix	80	101	0.87
Cytoplasmic	102	112	0.50
Transmembrane Helix	113	134	0.84
Non-Cytoplasmic	135	211	0.51
Transmembrane Helix	212	232	0.78
Cytoplasmic	233	306	0.42