YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31690-PD
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	28	0.84
Non-Cytoplasmic	29	93	0.85
Transmembrane Helix	94	113	0.89
Cytoplasmic	114	118	0.67
Transmembrane Helix	119	138	0.73
Non-Cytoplasmic	139	144	0.64
Transmembrane Helix	145	164	0.81
Cytoplasmic	165	172	0.89
Transmembrane Helix	173	198	0.80
Non-Cytoplasmic	199	233	0.93
Transmembrane Helix	234	255	0.91
Cytoplasmic	256	273	0.97
Transmembrane Helix	274	295	0.91
Non-Cytoplasmic	296	316	0.88
Transmembrane Helix	317	336	0.88
Cytoplasmic	337	403	0.94
Transmembrane Helix	404	428	0.82
Non-Cytoplasmic	429	436	0.82
Transmembrane Helix	437	457	0.94
Cytoplasmic	458	465	0.82
Transmembrane Helix	466	483	0.94
Non-Cytoplasmic	484	849	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATLSHKDL AGLAGCSALA FVLYLNTLNA GFVYDDRRAI LANGDVTGAR PLANLLRNDF  60
   61 WGTPLVDSGS HGSWRPLCVL SFRLNYLAGG MTPLGYHLVN VMLHCVATWL VFLVARTLLP 120
  121 SRMGVLAAGA LFAVHPAHTE AVAGLVGRAD LASCVCYLLA YLSYRRHMLN REWGSLILTI 180
  181 MLALAALLCK ETAITALLLC GLCDVLSPVG RENSDKVCDG SISGLASFNF QRRFRSLSIL 240
  241 GFTLLCGLYC RLSLLPRPST AFSAADNPTA HESCFWTRTL TFLYLPVANF GILLWPQELS 300
  301 FDWGMEAVSR IRTLWDARNI LTAGFYGSLV AILWKGSGLR SAASPMDFAE VANISLPLLR 360
  361 RLGGNSCHTW LGLTCDCHHQ LSAPSYRSAS AIYSTSSKSK SASWTAAPIL GTAFLVLPFL 420
  421 PASNLLFYVG FVMAERVLYL PSVGYCLLFG LGFGHLWQRV NSSWRSRLML LCGLALLLGV 480
  481 HGVRTFRRNL DWRDEEQLFR SAISINPPKA LGNLGSVLSA QGRYEEAELT LRMTLGHRPT 540
  541 MADAHFNLGV VHQKQLNFSS AIPCFRRAIE LRPQLAVAYL NLGTSLISLG DHRQEAISVL 600
  601 RTGARLEGSG VRDRGAHVEA RYTCYLQLSV LYRSDGRLQD AAAALRESLK ALPLLPQKQR 660
  661 AVLHLRLGEI LAELQDWNEA EHQQRLAMQL QPEQGAAYVT YGQTLARNGS RLAEAESWFK 720
  721 RALQLAPLEP SSHHHYADFL EQQERHHEAL GLRLRAAALA PQDYTLQSCV ADALRLLNRL 780
  781 AEAELWYRKA VTLQPMAAHA HANLGAILQM RGLRKEAVAC YHKALELQPG HAISRANLAR 840
  841 MNVHKHENE