YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr23a-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPPTRVQAS SRVVLKIFHF ILVAFSLRSR RLSRLVLWLQ FLGWLTWFIS MWTQSVIYAQ  60
   61 TIDCTLDCSL RHILTFFQTV SHAFIVVTSF LDGFRIKQDQ LDEPIAFEDS DPWLAFTVLA 120
  121 MLVPTLGVEY LVCSNAPEYA FRIRIYHLKT LPSFLALQVQ IISFILEVMK VNIRVRQTKL 180
  181 QLLILARELS CRWPQRKQKP QFSDQQAHRV KDLKRRYNDL HYLFVRINGY FGGSLLTIII 240
  241 VHFAIFVSNS YWLFVDIRTR PWRIYAILLN LGFIFNVALQ MAAACWHCQQ SYNLGRQIGC 300
  301 LISKLVKPQG SKLYNDLVSE FSLQTLHQRF VVTAKDFFSL NLHLLSSMFA AVVTYLVILI 360
  361 QFMFAERSST RGSG

Type	Start	End	Confidence
Cytoplasmic	1	34	0.64
Transmembrane Helix	35	56	0.84
Non-Cytoplasmic	57	112	0.57
Transmembrane Helix	113	133	0.87
Cytoplasmic	134	144	0.65
Transmembrane Helix	145	166	0.68
Non-Cytoplasmic	167	229	0.75
Transmembrane Helix	230	254	0.83
Cytoplasmic	255	263	0.68
Transmembrane Helix	264	284	0.93
Non-Cytoplasmic	285	341	0.75
Transmembrane Helix	342	365	0.87
Cytoplasmic	366	374	0.78