YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9870-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.65
Transmembrane Helix	30	49	0.82
Cytoplasmic	50	58	0.67
Transmembrane Helix	59	79	0.81
Non-Cytoplasmic	80	81	0.50
Transmembrane Helix	82	101	0.79
Cytoplasmic	102	117	0.76
Transmembrane Helix	118	138	0.88
Non-Cytoplasmic	139	150	0.85
Transmembrane Helix	151	171	0.92
Cytoplasmic	172	185	0.87
Transmembrane Helix	186	206	0.91
Non-Cytoplasmic	207	215	0.85
Transmembrane Helix	216	237	0.90
Cytoplasmic	238	242	0.93
Transmembrane Helix	243	263	0.91
Non-Cytoplasmic	264	282	0.89
Transmembrane Helix	283	302	0.95
Cytoplasmic	303	320	0.89
Transmembrane Helix	321	342	0.93
Non-Cytoplasmic	343	349	0.77
Transmembrane Helix	350	369	0.96
Cytoplasmic	370	391	0.90
Transmembrane Helix	392	412	0.71
Non-Cytoplasmic	413	432	0.68
Transmembrane Helix	433	452	0.95
Cytoplasmic	453	459	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEVASFVE HELNDVDLKS WRSIKESLDS FLTILPTILG FVLSRLLCGH LPMLSTRRFL  60
   61 LELFLIGLPT VILITVGSAY SYTYSLVVSL AVLVYIYGNV APNPPNFVYK VGKRPIVFTL 120
  121 LRATAYSGTC AAILAVDFPS YPTDYRKSRT FGAAVMDMGI GLFVVTMGLV SHRARSITDL 180
  181 KKLRRSVIPL LVLGLARTIV ITLIDYHQDE TEYGRHLNAF FILGFTKLLG SCYSLLVNSD 240
  241 EQLLALAIGL LFLHEVVLQL GLSEFVMSSA PHEGFFSANR EGLSSLHGCV ALYLLSIYFA 300
  301 KWYTSRDSLT YQGLIRKLKS ILFVAILCWK LVFISSFLTG IARVTFSFGY VIWIFAVSLS 360
  361 LIVIYAFFFE LKLVRPDICS KKSIRDDGQK NISLPTFVES LNMNGLTHFM ISNFLTGMVN 420
  421 MSLNPGHRSD LESVVILSIY MFVCAGVVFL MLKKGIRVA