YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr22a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPKRIHRI CKGLARFTIR ATLYGSWVLG LFPFTFDSRK RRLNRSKWLL AYGLVLNLTL  60
   61 LVLSMLPSTD DHNSVKVEVF QRNPLVKQVE ELVEVISLIT TLVTHLRTFS RSSELVEILN 120
  121 ELLVLDKNHF SKLMLSECHT FNRYVIEKGL VIILEIGSSL VLYFGIPNSK IVVYEAVCIY 180
  181 IVQLEVLMVV MHFHLAVIYI YRYLWIINGQ LLDMASRLRR GDSVDPDRIQ LLLWLYSRLL 240
  241 DLNHRLTAIY DIQVTLFMAT LFSVNIIVGH VLVICWINIT RFSLLVIFLL FPQALIINFW 300
  301 DLWQGIAFCD LAESTGKKTS MILKLFNDME NMDQETERRV TEFTLFCSHR RLKVCHLGLL 360
  361 DINYEMGFRM IITNILYVVF LVQFDYMNLK FKTD

Type	Start	End	Confidence
Cytoplasmic	1	47	0.59
Transmembrane Helix	48	67	0.91
Non-Cytoplasmic	68	143	0.65
Transmembrane Helix	144	166	0.69
Cytoplasmic	167	175	0.63
Transmembrane Helix	176	201	0.76
Non-Cytoplasmic	202	251	0.75
Transmembrane Helix	252	274	0.84
Cytoplasmic	275	281	0.52
Transmembrane Helix	282	302	0.83
Non-Cytoplasmic	303	365	0.80
Transmembrane Helix	366	387	0.75
Cytoplasmic	388	394	0.76