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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FBpp0307368, rob...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRFVFIVF LLKWTHAQGS HPPRIVEHPI DTTVPRHEPA TLNCKAEGSP TPTIQWYKDG  60
   61 VPLKILPGSH RITLPAGGLF FLKVVNSRRE TDAGIYWCEA KNELGVARSR NATLQVAVLR 120
  121 DEFRLEPQNT RIAQGDTALL ECAAPRGIPE PTVTWKKGGQ KLDLEGSKRV RIVDGGNLAI 180
  181 QDARQTDEGQ YQCIAKNPVG VRESSLATLK VHVKPYIIRG PHDQTVLEGA SVTFPCRVGG 240
  241 DPMPDVLWLR TASGGNMPLD RVSVLEDRSL RLERVTIADE GEYSCEADNV VGAITAMGTL 300
  301 TVYAPPKFIQ RPASKSVELG ADTSFECRAI GNPKPTIFWT IKNNSTLIFP GAPPLDRFHS 360
  361 LNTEEGHSIL TLTRFQRTDK DLVILCNAMN EVASITSRVQ LSLDSQEDRP PPIIISGPVN 420
  421 QTLPIKSLAT LQCKAIGLPS PTISWYRDGI PVQPSSKLNI TTSGDLIISD LDRQQDQGLY 480
  481 TCVASSRAGK STWSGFLRIE LPTNPNIKFY RAPEQTKCPS APGQPKILNA TASALTIVWP 540
  541 TSDKAGASSF LGYSVEMYCT NQSRTWIPIA SRLSEPIFTV ESLTQGAAYM FIVRAENSLG 600
  601 FSPPSPISEP ITAGKLVGVR DGSESTGTSQ LLLSDVETLL QANDVVELLE ANASDSTTAR 660
  661 LSWDIDSGQY IEGFYLYARE LHSSEYKMVT LLNKGQGLSS CTVPGLAKAS TYEFFLVPFY 720
  721 KSIVGKPSNS RRMRTLEDVP EAPPYGMEAI QFNRTSVFLK WLPPQPNRTR NGILTSYNVV 780
  781 VKGLDVHNTT RIFKNMTIDA AAPTLLLANL TTGVTYYIAV AAATRVGVGP FSKPAVLRID 840
  841 ARTQSLDTGY TRYPISRDIA DDFLTQTWFI VLLGSIIAII VFLLGALVLF KRYQFIKQTS 900
  901 LGSLHGNHAI GTVRKFPTLP LNGGGAVGAG GSNSTAAAGQ SGHGLWIDPT SGVWRQAAGG 960
  961 GNPGGVGSCT TKEQLPGYAQ ATAQQGQQPT LLPDYERLSP LNMPDYAEVA CSTFKSPTHG1020
 1021 APPMGGGGGG QSASLYDSCG AYATTNVVAN VKLYQNRYAT KPNQSSGSNN NNHQGNDYQS1080
 1081 TGMYSAPPSA HYGCLEPKQQ QQQQQPNLMT TSTASTAILT NSPAKVKKIN ITENKMDQLE1140
 1141 GKSERTNPFN QQQQLLLASN ALKQGLGAYA NTTLAAQMAS GGGAGTLRRQ RQPKTLYKSE1200
 1201 NNILGKSGLR QNTMNASVGA PSNGQMDFLT GGPPSEGGDF SGLGLCNSTN QLLNDWASSA1260
 1261 SIAAPGDYHF GSKQPSKQHL YVKAKDGTWS AVSSDAYQSF KHQQQHHPFL AGSGDNTKSL1320
 1321 ASVNSLAGDS KFLSSFGSSA NV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle