YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S-PB, S-PA
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQVFSAHP ALAVDQLQQA EQEEHNTSSN HHQQRSATQS RRHTKAAPKK FTLSRSCAGG  60
   61 GSGTLSGVHQ QVKPSPSNPA ISPECRKTLP VRTNYAAVDD DDDIECEDVD EVNFGQQEKE 120
  121 RERETRQPTK DCGTDETDHV QQRHKNTMTT SATAASRHHH QDGGGGDQSD LSSVISSPSV 180
  181 STVSSPLSTP TRLPQALQQQ LHCCQKSTGM ESRARTSPQQ IQHPHRQHHQ QQHHHHHHHH 240
  241 HLTAAGCTGG GGGGGGSGGS GSCKAKKLDP RLNPSPYRQL LPIALCLLSF AAVFATLIVY 300
  301 MDTTEIRHQQ FRLNMSRDYE LNGVAQDDPA LIDFLRQIHM GKYLGKASPK VAAAASVGVG 360
  361 PPPNSPRLAA AGSTFGSGNS SGSGADQLAH YVADLVGGKM NGAVIQSLSG PLAHLITAPW 420
  421 LSEQLNWMGV LVEPEPRWYF TLRKQNAQRA RMQVVHACVS PNTYPKEITI HNEDVRINSL 480
  481 HDEETSWFNS RVKCFPLYTI MLACERTEYD LLSLGVQGHE LEILQTLPFD KVKIDVISIH 540
  541 LLEDHEDVAD YVLDITRFLA GKSYKLQRKI GRNYFYQRLN ASASRTRKKD ILLLKTP

Type	Start	End	Confidence
Non-Cytoplasmic	1	239	0.72
Transmembrane Helix	240	259	0.56
Cytoplasmic	260	279	0.73
Transmembrane Helix	280	301	0.93
Non-Cytoplasmic	302	597	0.83