YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30923719, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.92
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	81	0.97
Transmembrane Helix	82	102	0.86
Cytoplasmic	103	151	0.71
Transmembrane Helix	152	175	0.81
Non-Cytoplasmic	176	247	0.76
Transmembrane Helix	248	266	0.78
Cytoplasmic	267	274	0.82
Transmembrane Helix	275	296	0.90
Non-Cytoplasmic	297	303	0.63
Transmembrane Helix	304	324	0.86
Cytoplasmic	325	339	0.78
Transmembrane Helix	340	363	0.87
Non-Cytoplasmic	364	383	0.87
Transmembrane Helix	384	404	0.92
Cytoplasmic	405	410	0.82
Transmembrane Helix	411	434	0.83
Non-Cytoplasmic	435	441	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTATFWRC LFFTLCGSFL TVTQAKAATS NASSFLEVSL RYFDEQLLLD ILPRAQCPGE  60
   61 DEGSPMDEFA DLFTVDQLRQ GWVVLHVFAA VYFFILLAII CNDYFLPTVE CICEDLHLSK 120
  121 DVAAATFMAT ATSMPEFFTN TISTLILESD MGLGTIIGSL MFNTLGVAGL AALAIDKPPE 180
  181 NSAKAQLPLK KDPLSGDGLF VLNLPENTSS MSSTANLTRN KHLNDEDDVA DVVPGSIYAY 240
  241 PRDASGWMQF WWIFVFPIKV TLSLLIPHPM KYRRLYPLSF IMCILCIGGN AYLIVWMLTA 300
  301 FGVAIHVPTI VMGLTFLAAG STMPEAVSSL ISLRNGENGI GVSNSLGANS LAILLSLGVP 360
  361 WFIKNCIHYG TGEPQQVGTQ GIEYNILILI ISTMALFIIL SFSGYRLTKR VGVALFTVYG 420
  421 VFIVLQILIE MNVFFPRDCS S