YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	37	0.93
Non-Cytoplasmic	38	59	0.87
Transmembrane Helix	60	83	0.90
Cytoplasmic	84	101	0.88
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	146	0.86
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	182	0.92
Transmembrane Helix	183	206	0.90
Non-Cytoplasmic	207	239	0.90
Transmembrane Helix	240	260	0.89
Cytoplasmic	261	270	0.76
Transmembrane Helix	271	292	0.91
Non-Cytoplasmic	293	302	0.90
Transmembrane Helix	303	327	0.84
Cytoplasmic	328	336	0.89
Transmembrane Helix	337	358	0.93
Non-Cytoplasmic	359	376	0.87
Transmembrane Helix	377	399	0.91
Cytoplasmic	400	408	0.91
Transmembrane Helix	409	431	0.86
Non-Cytoplasmic	432	452	0.88
Transmembrane Helix	453	473	0.91
Cytoplasmic	474	514	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVNRWLFST NHKDIGTLYL LFGAWAGMVG TALSILIRAE LGQPGALLGD DQIYNVIVTA  60
   61 HAFVMIFFMV MPMMIGGFGN WLVPLMIGAP DMAFPRMNNM SFWLLPPSFL LLLASSMVEA 120
  121 GAGTGWTVYP PLAGNLAHAG ASVDLTIFSL HLAGVSSILG AINFITTIIN MKPPAMTQYQ 180
  181 TPLFVWSVLI TAVLLLLSLP VLAAGITMLL TDRNLNTTFF DPAGGGDPIL YQHLFWFFGH 240
  241 PEVYILILPG FGIISHVVTY YSGKKEPFGY MGMVWAMMSI GFLGFIVWAH HMFTVGLDVD 300
  301 TRAYFTSATM IIAIPTGVKV FSWLATLHGG NIKWSPAMLW ALGFIFLFTV GGLTGIVLSN 360
  361 SSLDIVLHDT YYVVAHFHYV LSMGAVFAIM AGFVHWFPLF SGYTLNDTWA KAHFAIMFVG 420
  421 VNMTFFPQHF LGLAGMPRRY SDYPDAYTTW NTVSSMGSFI SLTAVLVMIF MIWEAFASKR 480
  481 EVLSISYSST NLEWLHGCPP PYHTFEEPSY VKVK