YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU4M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.92
Transmembrane Helix	23	43	0.92
Non-Cytoplasmic	44	60	0.86
Transmembrane Helix	61	80	0.89
Cytoplasmic	81	93	0.80
Transmembrane Helix	94	112	0.91
Non-Cytoplasmic	113	115	0.81
Transmembrane Helix	116	137	0.90
Cytoplasmic	138	146	0.85
Transmembrane Helix	147	167	0.95
Non-Cytoplasmic	168	192	0.82
Transmembrane Helix	193	210	0.91
Cytoplasmic	211	222	0.68
Transmembrane Helix	223	241	0.89
Non-Cytoplasmic	242	256	0.75
Transmembrane Helix	257	277	0.94
Cytoplasmic	278	284	0.89
Transmembrane Helix	285	304	0.94
Non-Cytoplasmic	305	311	0.69
Transmembrane Helix	312	334	0.87
Cytoplasmic	335	349	0.89
Transmembrane Helix	350	373	0.84
Non-Cytoplasmic	374	392	0.84
Transmembrane Helix	393	413	0.95
Cytoplasmic	414	433	0.92
Transmembrane Helix	434	454	0.84
Non-Cytoplasmic	455	459	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIIFPSIM LLPLTWLSAN KKIWTNVTSY SFLVSLLSLS LLWQNDENYL NFSVMFSSDP  60
   61 LSTPLIILTT WLLPLMMLAS QNHMKKENMM HQKLYISMLI SLQILLIMTF SATELILFYI 120
  121 LFEATLIPTL IIITRWGNQT ERLNAGIYFL FYTLIGSIPL LIALISIQNS MGTLNFLILS 180
  181 LTTHPLPSTW SNTILWLACM MAFMIKMPLY GVHLWLPKAH VEAPIAGSMI LAAILLKLGG 240
  241 YGMMRVSIIL DPLTKSLAYP FIILSLWGMI MTSSICLRQT DLKSLIAYSS VSHMALVITA 300
  301 IMIQTPWSFM GATMLMIAHG LTSSLLFCLA NTNYERIHSR TMIMARGLQM IFPLMATWWL 360
  361 LASLANLALP PLINLMGELF IVMATFSWSN PSIILMATNI VITGIYSMYM IITTQRGKLT 420
  421 SHMNNLQPSH TRELTLMALH IIPLMLLTIN PKLITGLTM