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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1398935, gi|6...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVLPGPVP PGPRVALLLP LLLLLLVAAA GSAQGQAVDL DALCSYTWEA VDSKNNAVYK  60
   61 INPCGHVDNP RCGPTSAVCM CDLKSENCRS VGDSLLRSSA KSLLEFNTTT GCQPSEHRIQ 120
  121 TSITFLCGKT LGTPEFVTAT DCVHYFEWRT TAACKKDIFK ADKEVPCYVF DDKLQKHDLN 180
  181 PLIKLNGGYL VDDSDADASL FINVCRDIDS LRDPSTQLRV CPAGTAACLL KGNQAFDVGR 240
  241 PKEGLKLLSK DRLVLTYVKE EGEKPDFCNG HSPAVTVTFV CPSERREGTI PKLTANCRYE 300
  301 VEWITEYASH RDYLESETCS LSSEQHDIAI DLSPLAQHEE GSPYVADGGE YRFFMNVCGD 360
  361 TKVSLCNKEA AVCQEKKVDS TQVKIAGRHQ NQTLRYSDGD LTLIYSGGDE CSSGFQRMSV 420
  421 INFECNKTAG QDGRGEPVFT IEVDCTYFFT WDTKYACVKE KEDLLCGAID GKKRYDLSVL 480
  481 ARHSESEQNW EAVDGSQAES EKRNFFINVC HRVLQAGKAK NCPEGAAVCA VDKSGSKNLG 540
  541 KFVSSPTKEK GHIQLSYSDG DDCGNDKKIT TNITFVCKPG DLESAPVLRA AGPDGCSYEF 600
  601 EWHTAAACVL SQTEGENCTV LDAQAGFSFD LSLLTKKNGA YKVETDKYDF YINVCGPVSV 660
  661 NLCQSNSGAC QVAKSGKSWN LGLSNTKLTY YDGMIQLSYR NGTLYNNEKH TPRSTLITFL 720
  721 CDRDAGVGFP EYQEEDNSTY NFRWYTSYAC PEEPLECMVT DPSMMEQYDL SSLVKFEGGR 780
  781 GGNWYAMENS REHFTRRKYY LNVCRPLNPV PGCDRYASAC QSKYENNEGS LAETVAISNL 840
  841 GVAKTGPVVE ESGSLLLEYV NGSACTTSDG RLTTYSTRIH LVCGRGTMNS HPIFTFNWEC 900
  901 VVSFLWNTEA ACPIQTITDS DQACSIRDPN SGFVFNLSPL NYSQGHMVLG IGKTFVFNIC 960
  961 GTMPACGTVA GKPALGCEAE TKIKDIKDLK PERPVGMEKS LQLSAEGFLT LTYKGSSPSD1020
 1021 RGTAFIIRFI CNGDIYPGTP KFLHQDIDSA RGIRNTFFEF ETALACIPSV VDCQVTDPAG1080
 1081 NEYDLSALSM VRKPWTAVDT SVHGKKRRFY LSVCTPLPYI PGCDGIAMGS CMVSEDKSQN1140
 1141 LGVVQISPQA TGNGSLSILY VNGDRCGNQR YSTRIVFECA QTSGSPMFQL LNNCEYVFVW1200
 1201 RTVEACPVVR EEGDNCQVKD PRHGNLYDLK PLALNDTIIS AGEYTYYFRV CGKLSLDVCS1260
 1261 AHDGSKAVSS CQEKKGPQGF QKVAGLLNQK LTFENGLLKM NYSGGDTCHK VYQRSTTIYF1320
 1321 YCDRTTQKPV FLKETLDCSY LFEWRTQYAC PPFNVTECSI QDEAGNSIDL SSLSRYSDNW1380
 1381 EAVTRTGATE HYLINVCKSL SPQAGTDPCP PEAAVCLLDG SKPVNLGRVR DGPQWTAGVT1440
 1441 VLKYVDGDLC PDKIRKRSTI IRFTCSDSQV NSRPLFISAV QDCEYTFSWP TPAACPVKSN1500
 1501 IHDDCQVTNP STGHLFDLSS LSGKAGITAS YSEKGMVFMS ICEENVNCSP GVGACFGQTR1560
 1561 ISVGQASKRL SYKDQVLQLV YENGSPCPSK SGLRYKSVIS FVCRPEAGPT NRPMLISLDK1620
 1621 QSCTLFFSWH TPLACEQATE CTVRNGSSII DLSPLIHRTG GYEAYDESED DTSDTTPDFY1680
 1681 INICQPLNPM HGVPCPAGAS VCKVPVDGPP IDIGRVTGPP IFNPVANEVY LNFESSTPCL1740
 1741 ADKYMNYTSL IAFHCRRGIS MGTPKLIRNN DCDFVFEWET PIVCPDEVKT QGCAVTDEQL1800
 1801 LYSFNLTSLS TSTFKVTRDA HTYSIGVCTT AADLDQEGCK DGGVCLLSGS KGASFGRLAS1860
 1861 MQLDYRHQDE AVILSYVNGD PCPPETEDGE PCVFPFIYKG ETYDECVLEG RAKLWCSKTA1920
 1921 NYDRDHEWGF CRPSNSHRMS AIIFTCDENE DIGRPEVFSE DRGCEVTFEW KTKVVCPPKK1980
 1981 MECKFVQKHK TYDLRLLSSL TGSWDFVHEG NSYFINLCQR VYKGPLDCSE RASICKKSAT2040
 2041 GQVQVLGLVH TQKLEVIDET VLVTYSKGHS CGGNKTASSV IELTCAKTVG RPAFKRFDID2100
 2101 SCTYYFYWYS RAACAVRPQE VNMVNGTLTN PVTGKSFSLG EIYFKLFSAS GDMRSNGDNY2160
 2161 LYEIQLSSIS SSSNPACSGA NICQVKPNDQ HFSRKVGTSD MTKYYVQDGD LDVVFTSSST2220
 2221 CGKDKTKSVS STIFFHCDPL LKDGVPEFSH ETADCQYLFS WYTSAVCPLG VDFDDENAVP2280
 2281 EYKGLSERSQ AVGAVLSLLL VALTGCLLAL LLHKKERRET VINKLTNCCR RSSGVSYKYS2340
 2341 KVSKEEETDE NETEWLMEEI QVPAPRLGKD GQENGHITTK TVKAEALTSL HGDDQDSEDE2400
 2401 VLTIPEVKVH TGRGAEVESS QPLRNPQRKV LKEREGERMG LVRGEKARRG KFRPGQRKPT2460
 2461 TPAKLVSFHD DSDEDLLHI

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