YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALY_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLGCSFSG KPGKETGDQD GAAMDSVPLI SPLDVSQLQP SFPDQVVIKT QTEYQLTSAD  60
   61 QPKKFADLEG QRLACSHPEE GRRLPTARMI AFAMALLGCV LIMYKAIWYD QFTCPDGFLL 120
  121 RHKICTPLTL EMYYTEMDPE RHRSILAAIG AYPLSRKHGT EMPAIWGNSY RAGKEEHKGT 180
  181 TPAAMTVSTA AAAAAAEGNE PSGKPLDMRE KEDPQKAEDV PSQSPK

Type	Start	End	Confidence
Cytoplasmic	1	88	0.92
Transmembrane Helix	89	108	0.91
Non-Cytoplasmic	109	226	0.93