YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMGO3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWLVLLGLL LCMLGAGSGT SDLEGVLPPD PHNCPNKCVC AADVLSCAGR GLQDLPAALP  60
   61 ATAAELDLSH NALKRLHPGW LAPLSRLRAL YLGYNKLDVL GRGVFTNASG LRILDLSSNL 120
  121 LRRLRTYDLD GLEELEKLLL FNNRLMHLDL DAFQGLSMLS HLYLSCNELS SFSFNHLHGL 180
  181 GLTRLRTLDL SSNWLGHVSV PELAALPTFL KNRLYLHNNP LPCDCSLYHL LRRWHQRGLS 240
  241 ALHDFEREYT CLAFKVAESR VRFFEHSRVF KNCSVAAAPG LELPEEELHT HVGQSLRLFC 300
  301 NTTVPAARVA WVSPKNELLV APGSQDGSIA VLADGSLAIG RVQEQHAGLF VCLASGPRLH 360
  361 HNQTLEYNVS VHKPRPEPEA FNTGFTTLLG CIVGLVLVLL YLFAPPCRGC CRCCRRACRN 420
  421 RCWPRASSPL QELSAQSSVL STTPPDAPSR KASVHKHVAF LEPGKKGLNG RVQLAVAEDF 480
  481 DLCNPMGLQL KAGSESASST GSEGLMMS

Type	Start	End	Confidence
Signal Peptide	1	21	0.95
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	383	0.99
Transmembrane Helix	384	404	0.86
Cytoplasmic	405	508	0.90