YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HCAR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQNHFLVI NGKNCCVFRD ENIAKVLPPV LGLEFVFGLL GNGLALWIFC FHLKSWKSSR  60
   61 IFLFNLAVAD FLLIICLPFL TDNYVQNWDW RFGSIPCRVM LFMLAMNRQG SIIFLTVVAV 120
  121 DRYFRVVHPH HFLNKISNRT AAIISCFLWG ITIGLTVHLL YTDMMTRNGD ANLCSSFSIC 180
  181 YTFRWHDAMF LLEFFLPLGI ILFCSGRIIW SLRQRQMDRH VKIKRAINFI MVVAIVFVIC 240
  241 FLPSVAVRIR IFWLLYKHNV RNCDIYSSVD LAFFTTLSFT YMNSMLDPVV YYFSSPSFPN 300
  301 FFSTCINRCL RRKTLGEPDN NRSTSVELTG DPSTIRSIPG ALMTDPSEPG SPPYLASTSR 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.95
Transmembrane Helix	31	51	0.91
Cytoplasmic	52	60	0.86
Transmembrane Helix	61	81	0.96
Non-Cytoplasmic	82	98	0.91
Transmembrane Helix	99	120	0.84
Cytoplasmic	121	139	0.84
Transmembrane Helix	140	161	0.93
Non-Cytoplasmic	162	188	0.95
Transmembrane Helix	189	210	0.91
Cytoplasmic	211	225	0.94
Transmembrane Helix	226	247	0.92
Non-Cytoplasmic	248	288	0.85
Transmembrane Helix	289	306	0.53
Cytoplasmic	307	360	0.69