YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNR1B_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAALWVAL VVELQLWATG HTVPAKVVLT PYKPEPGNQC QISQEYYDKK AQMCCAKCPP  60
   61 GQYAKHFCNK TSDTVCADCA AGMFTQVWNH LHTCLSCSSS CSDDQVETHN CTKKQNRVCA 120
  121 CNADSYCALK LHSGNCRQCM KLSKCGPGFG VARSRTSNGN VICSACAPGT FSDTTSSTDV 180
  181 CRPHRICSIL AIPGNASTDA VCASESPTPS AVPRTIYVSQ PEPTRSQPMD QEPGPSQTPH 240
  241 IPVSLGSTPI IEPSITGGIS LPIGLIVGLT TLGLLMLGLA NCFILVQRKK KPSCLQRETM 300
  301 VPHLPDDKSQ DAIGLEQQHL LTTAPSSSSS SLESSASAGD RRAPPGGHPQ ARVTAEAQGS 360
  361 QEACAGSRSS DSSHGSHGTH VNVTCIVNVC SSSDHSSQCS SQASTTVGDP DANPSGSPKD 420
  421 EQVPFSQEEC PSQSQWETTE TLQNHDKPFP LGVPDVGMKP NQPGWYDQIA VKVP

Type	Start	End	Confidence
Signal Peptide	1	18	0.95
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	260	0.98
Transmembrane Helix	261	285	0.85
Cytoplasmic	286	474	0.95