YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29424037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	29	0.91
Non-Cytoplasmic	30	39	0.59
Transmembrane Helix	40	68	0.72
Cytoplasmic	69	77	0.39
Transmembrane Helix	78	102	0.76
Non-Cytoplasmic	103	121	0.62
Transmembrane Helix	122	141	0.83
Cytoplasmic	142	157	0.64
Transmembrane Helix	158	181	0.90
Non-Cytoplasmic	182	188	0.60
Transmembrane Helix	189	210	0.91
Cytoplasmic	211	301	0.80
Transmembrane Helix	302	324	0.82
Non-Cytoplasmic	325	364	0.87
Transmembrane Helix	365	387	0.73
Cytoplasmic	388	407	0.87
Transmembrane Helix	408	429	0.93
Non-Cytoplasmic	430	443	0.83
Transmembrane Helix	444	462	0.92
Cytoplasmic	463	469	0.85
Transmembrane Helix	470	491	0.91
Non-Cytoplasmic	492	510	0.92
Transmembrane Helix	511	532	0.94
Cytoplasmic	533	695	0.98
Transmembrane Helix	696	716	0.96
Non-Cytoplasmic	717	718	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVLETADI AIVALYFVLV MCIGFFAMWK SNRSTVSGYF LAGRSMTWVA IGASLFVSNI  60
   61 GSEHFIGLAG SGAASGFAVG AWEFNALLLL QLLGWVFIPI YIRSGVYTMP EYLSKRFGGH 120
  121 RIQVYFAALS LLLYIFTKLS VDLYSGALFI QESLGWNLYV SVILLIGMTA LLTVTGGLVA 180
  181 VIYTDTLQAL LMIIGALTLM VISMMKVGGF EEVKRRYMLA SPNVASILLT HNLSNTNSCM 240
  241 VHPKADALKM LRDPTDEDVP WPGFILGQTP ASVWYWCADQ VIVQRVLAAK NIAHAKGSTL 300
  301 MAGFLKLLPM FIIVVPGMIS RILFVDDIAC INPEHCMQVC GSRAGCSNIA YPRLVMELVP 360
  361 VGLRGLMMAV MIAALMSDLD SIFNSASTIF TLDVYKLLRN NASSRELMIV GRIFVAFMVV 420
  421 ISIAWVPIIV EMQGGQMYLY IQEVADYLTP PVAALFLLAI FWKRCNEQGA FYGGMAGFVL 480
  481 GAIRLILAFT YRAPECDQPD NRPSFIKDIH YMYVATALFW ITGLITVIVS LLTPPPTKDQ 540
  541 IRTTTFWSKK TVVTKESCSQ KDEPYKMQEK SILRCSENSE VVSHTIPNGK SEDSIKGLQP 600
  601 EDVNLLVTCR EEGNPVASMG HSGAETPVDA YSNGQAALMG ERAREKETES RSRYWKFIDW 660
  661 FCGFKSRSLS KRSLRDSMDE EAVCLQMLEE TPRVRVILNI GLFAVCSLGI FMFVYFSL