YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP2D3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLAGTGLW PMAIFTVIFI LLVDLMHRRQ RWTSRYPPGP VPWPVLGNLL QVDLCNMPYS  60
   61 MYKLQNRYGD VFSLQMGWKP VVVINGLKAV QELLVTCGED TADRPEMPIF QHIGYGHKAK 120
  121 GVVLAPYGPE WREQRRFSVS TLRNFGVGKK SLEQWVTDEA SHLCDALTAE AGRPLDPYTL 180
  181 LNKAVCNVIA SLIYARRFDY GDPDFIKVLK ILKESMGEQT GLFPEVLNMF PVLLRIPGLA 240
  241 DKVFPGQKTF LTMVDNLVTE HKKTWDPDQP PRDLTDAFLA EIEKAKGNPE SSFNDANLRL 300
  301 VVNDLFGAGM VTTSITLTWA LLLMILHPDV QCRVQQEIDE VIGQVRHPEM ADQAHMPFTN 360
  361 AVIHEVQRFA DIVPMNLPHK TSRDIEVQGF LIPKGTTLIP NLSSVLKDET VWEKPLRFHP 420
  421 EHFLDAQGNF VKHEAFMPFS AGRRACLGEP LARMELFLFF TCLLQRFSFS VPTGQPRPSD 480
  481 YGVFAFLLSP SPYQLCAFKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.75
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	304	0.79
Transmembrane Helix	305	326	0.71
Non-Cytoplasmic	327	500	0.83