YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26453326, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.92
Transmembrane Helix	98	116	0.85
Non-Cytoplasmic	117	139	0.89
Transmembrane Helix	140	161	0.89
Cytoplasmic	162	174	0.93
Transmembrane Helix	175	196	0.92
Non-Cytoplasmic	197	202	0.75
Transmembrane Helix	203	222	0.93
Cytoplasmic	223	289	0.98
Transmembrane Helix	290	314	0.79
Non-Cytoplasmic	315	345	0.90
Transmembrane Helix	346	368	0.82
Cytoplasmic	369	413	0.94
Transmembrane Helix	414	432	0.91
Non-Cytoplasmic	433	438	0.78
Transmembrane Helix	439	458	0.91
Cytoplasmic	459	467	0.71
Transmembrane Helix	468	487	0.91
Non-Cytoplasmic	488	500	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRGGAGSS RRRRTGSRVS IQGGSGPMVD EEEVRDAAVG PDLGAGGDAP APAPVPAPAH  60
   61 TRDKDRQTSV GDGHWELRCH RLQDSLFSSD SGFSNYRGIL NWCVVMLILS NARLFLENLI 120
  121 KYGILVDPIQ VVSLFLKDPY SWPAPCLIIA SNIFIVATFQ IEKRLSVGAL TEQMGLLLHV 180
  181 VNLATIICFP AAVALLVESI TPVGSLFALA SYSIIFLKLF SYRDVNLWCR QRRVKAKAVS 240
  241 AGKKVSGAAA QNTVSYPDNL TYRDLYYFIF APTLCYELNF PRSPRIRKRF LLRRVLEMLF 300
  301 FTQLQVGLIQ QWMVPTIQNS MKPFKDMDYS RIIERLLKLA VPNHLIWLIF FYWLFHSCLN 360
  361 AVAELLQFGD REFYRDWWNA ESVTYFWQNW NIPVHKWCIR HFYKPMLRLG SNKWMARTGV 420
  421 FLASAFFHEY LVSIPLRMFR LWAFTAMMAQ VPLAWIVNRF FQGNYGNAAV WVTLIIGQPV 480
  481 AVLMYVHDYY VLNYDAPVGA