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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: WHRN_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAQLDGLSV SSSSTGSLGS AAAAAGGGGG AGLRLLSANV RQLHQALTAL LSEPEREQFT  60
   61 HCLNAYHARR NVFDLVRTLR VLLDSPVKRR LLPMLRLVIP RSDQLLFDQY TAEGLYLPAT 120
  121 TPYRQPAWAA PDGAGPGEVR LVSLRRAKAH EGLGFSIRGG SEHGVGIYVS LVEPGSLAEK 180
  181 EGLRVGDQIL RVNDKSLARV THAEAVKALK GSKKLVLSVY SAGRIPGGYV TNHIYTWVDP 240
  241 QGRSTSPPSS LPHGSTLRQH EDDRRSALHL LQSGDEKKVN LVLGDGRSLG LTIRGGAEYG 300
  301 LGIYITGVDP GSEAESSGLK VGDQILEVNG RSFLSILHDE AVKLLKSSRH LILTVKDVGR 360
  361 LPHARTTVDQ TKWIASSRIG ESITNSAGFP GDLTEEGTNK PGFYKGPAGS QVTLSSLGNQ 420
  421 TRALLDDQAR HLLTEQERAT MMYYLDQYRG GTISVEALVM ALFELLNTHA KFSLLSEVRG 480
  481 IISPQDLDRF DHLVLRREIE SMKARQPPGP GVGDTYSMVS YSDTGSSTGS HGTSTTVSSA 540
  541 RERLLWLIDL MENTLDLEGT CETTQGSTNA LPDVSVDDVR SPSEDLPGIK PPPPPPPLAQ 600
  601 GHDRLLGQTR KPVREDSAPL SSAAHSGIVF SAPRNRSPPP PPGIAPTPTP GPSSARDSPS 660
  661 SPIYASISHA NPSSRKPLDT HLALVNQHPI GPFPRVQSPP HLKSPPAEAP GAGACLPPPS 720
  721 PSEHADAMGA NQHFVLVEVH RPDSEPDVNE VRALPQTRTA STLSQLSDSG QTLSEDSGVD 780
  781 AGETEASTSG RGRQTANTKN KNGKELPQTE RTTEGANKPP GLLEPTSTLI RVRKSAATLG 840
  841 IAIEGGANTR QPLPRIVTIQ RGGSAHNCGQ LKVGHVILEV NGQTLRGKEH REAARVIAEA 900
  901 FKTKERDYID FLVTEFNVML 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle