YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29468523
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.47
Transmembrane Helix	36	57	0.87
Cytoplasmic	58	72	0.48
Transmembrane Helix	73	94	0.86
Non-Cytoplasmic	95	100	0.46
Transmembrane Helix	101	124	0.91
Cytoplasmic	125	133	0.45
Transmembrane Helix	134	158	0.81
Non-Cytoplasmic	159	173	0.48
Transmembrane Helix	174	193	0.89
Cytoplasmic	194	316	0.77
Transmembrane Helix	317	336	0.65
Non-Cytoplasmic	337	364	0.74
Transmembrane Helix	365	387	0.83
Cytoplasmic	388	437	0.89
Transmembrane Helix	438	460	0.82
Non-Cytoplasmic	461	466	0.69
Transmembrane Helix	467	486	0.91
Cytoplasmic	487	544	0.94
Transmembrane Helix	545	569	0.83
Non-Cytoplasmic	570	591	0.85
Transmembrane Helix	592	612	0.84
Cytoplasmic	613	698	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRSFCSSD GSDPLWDWNV TWHTSNPDFT KCFQNTVLTW VPCFYLWSCF PLYFLYLSRH  60
   61 DRGYIQMTHL NKAKTALGFF LWIICWADLF YSFWERSQGM LLAPVLLVSP TLLGITMLLA 120
  121 TFLIQFERRK GVQSSGIMLT FWLVALLCAL AILRSKIISA LKKDAQVDMF RDSAFYLYFT 180
  181 LVFIQLVLSC FSDSSPLFSE TVRDPNPCPE SSASFLSRIT FWWITGMMVQ GYRQPLKSSD 240
  241 LWSLNKEDTS EEVVPVLVNN WKKECVKSRK QPVRIVYAPP KDPTKPKGSS QLDVNEEVEA 300
  301 LIVKSSHKDR DPSLFKVLYK TFGPYFLMSF LYKALHDLMM FAGPEILELI INFVNDREAP 360
  361 DWQGYLYTAL LFVSACLQTL ALHQYFHICF VTGMRIKTAV VGAVYRKALV ITNSARKSST 420
  421 VGEIVNLMSV DAQRFMDLAT YINMIWSAPL QVTLALYFLW LNLGPSVLAG VAVMILMVPF 480
  481 NAVMAMKTKT YQVAHMKSKD NRIKLMNEIL NGIKVLKLYA WELAFQDKVM NIRQEELKVL 540
  541 KKSAYLAAVG TFTWVCTPFL VALSTFAVFV TVDEKNILDA KKAFVSLALF NILRFPLNIL 600
  601 PMVISSIVQA SVSLKRLRIF LSHEELEPDS IERWSIKDGG GMNSITVKNA TFTWARDEPP 660
  661 TLNGAPWPMC PSRPGFRMTL SERTYCLGAP CRNIATRR