YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.47
Transmembrane Helix	36	57	0.87
Cytoplasmic	58	72	0.48
Transmembrane Helix	73	94	0.86
Non-Cytoplasmic	95	100	0.46
Transmembrane Helix	101	124	0.91
Cytoplasmic	125	133	0.45
Transmembrane Helix	134	158	0.81
Non-Cytoplasmic	159	173	0.48
Transmembrane Helix	174	193	0.89
Cytoplasmic	194	316	0.77
Transmembrane Helix	317	336	0.65
Non-Cytoplasmic	337	364	0.74
Transmembrane Helix	365	387	0.83
Cytoplasmic	388	437	0.89
Transmembrane Helix	438	460	0.83
Non-Cytoplasmic	461	466	0.70
Transmembrane Helix	467	486	0.92
Cytoplasmic	487	544	0.95
Transmembrane Helix	545	569	0.84
Non-Cytoplasmic	570	591	0.87
Transmembrane Helix	592	612	0.87
Cytoplasmic	613	968	0.98
Transmembrane Helix	969	990	0.92
Non-Cytoplasmic	991	1022	0.92
Transmembrane Helix	1023	1045	0.88
Cytoplasmic	1046	1094	0.94
Transmembrane Helix	1095	1129	0.78
Non-Cytoplasmic	1130	1198	0.47
Transmembrane Helix	1199	1221	0.82
Cytoplasmic	1222	1225	0.39
Transmembrane Helix	1226	1248	0.67
Non-Cytoplasmic	1249	1532	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSSFCSSD GSDPLWDWNV TWHTSNPDFT KCFQNTVLTW VPCFYLWSCF PLYFLYLSRH  60
   61 DRGYIQMTHL NKAKTALGFF LWIICWADLF YSFWERSQGM LLAPVLLVSP TLLGITMLLA 120
  121 TFLIQFERRK GVQSSGIMLT FWLVALLCAL AILRSKIISA LKKDAQVDMF RDSAFYLYFT 180
  181 LVFIQLVLSC FSDSSPLFSE TVRDPNPCPE SSASFLSRIT FWWITGMMVQ GYRQPLKSSD 240
  241 LWSLNKEDTS EEVVPVLVNN WKKECVKSRK QPVRIVYAPP KDPTKPKGSS QLDVNEEVEA 300
  301 LIVKSSHKDR DPSLFKVLYK TFGPYFLMSF LYKALHDLMM FAGPEILELI INFVNDREAP 360
  361 DWQGYLYTAL LFVSACLQTL ALHQYFHICF VTGMRIKTAV VGAVYRKALV ITNSARKSST 420
  421 VGEIVNLMSV DAQRFMDLAT YINMIWSAPL QVTLALYFLW LNLGPSVLAG VAVMILMVPF 480
  481 NAVMAMKTKT YQVAHMKSKD NRIKLMNEIL NGIKVLKLYA WELAFQDKVM NIRQEELKVL 540
  541 KKSAYLAAVG TFTWVCTPFL VALSTFAVFV TVDEKNILDA KKAFVSLALF NILRFPLNIL 600
  601 PMVISSIVQA SVSLKRLRIF LSHEELEPDS IERWSIKDGG GMNSITVKNA TFTWARDEPP 660
  661 TLNGITFAIP DGALVAVVGQ VGCGKSSLLS ALLAEMDKVE GHVTLKGSVA YVPQQAWIQN 720
  721 DSLRENILFG RPLQEHCYKA VMEACALLPD LEILPSGDLT EIGEKGVNLS GGQKQRVSLA 780
  781 RAVYCNSDIY LLDDPLSAVD AHVGKHIFEK VVGPMGLLKN KTRILVTHGI SYLPQVDVII 840
  841 VMSGGKISEM GSYQELLDRD GAFAEFVRTY ANTEQDLASE DDSKNGVSGL GKESKPVENG 900
  901 ILVTDAVGKP LQRHLSNSSS HSVVTNQQHS STAELQKSGV KEETWKLMEA DKAQTGQVKL 960
  961 SVYWNYMKAI GLCISFLSIF LFLCNHVSAL ASNYWLSLWT DDRPAVNGTQ ENRNFRLSVY1020
 1021 GALGILQGVA VFGYSMAVSI GGIFASRRLH LDLLQNVLRS PMSFFERTPS GNLVNRFSKE1080
 1081 LDTVDSMIPQ VIKMFMGSLF SVIGAVIIIL LATPIAAVII PPLGLVYFFV QRFYVASSRQ1140
 1141 LKRLESVSRS PVYSHFNETL LGVSVIRAFE EQERFIRQSD LKVDENQKAY YPSIVANRWL1200
 1201 AVRLECVGNC IVLFAALFAV ISRHSLSAGL VGLSVSYSLQ ITAYLNWLVR MSSEMETNIV1260
 1261 AVERLKEYSE TEKEASWQIQ ETAPPSTWPH SGRVEFRDYC LRYREDLDLV LKHINVTIEG1320
 1321 GEKVGIVGRT GAGKSSLTLG LFRINESAEG EIIIDGINIA KIGLHNLRFK ITIIPQDPVL1380
 1381 FSGSLRMNLD PFSQYSDEEV WMALELAHLK GFVSALPDKL NHECAEGGEN LSVGQRQLVC1440
 1441 LARALLRKTK ILVLDEATAA VDLETDDLIQ STIRTQFEDS TVLTIAHRLN TIMDYTRVIV1500
 1501 LDKGEIRECG APSELLQQRG VFYSMAKDAG LV