YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149028160, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAPSTRAKM SSIFAYQSSE VDWCESNFQH SELVAEFYNT FSNVFFLIFG PLMMFLMHPY  60
   61 AQKRSWGIYG VSVLFMVIGL FSMYFHMTLS FVGQLLDEIS ILWLLASGYS VWLPRCYFPK 120
  121 FIKGSRFYFS CLVIMTTIIS TFLTFVKPTV NAYALNSIAI HILYIVRKEY KKTSNRDLRH 180
  181 LIAVSVILWA AALTSWVSDR VLCSFWQRIQ FFYLHSIWHV LISITFPYGI VTMALVDAKY 240
  241 EMPDKTLKVH YWPRDSWLIG LPYVEIQEND KNC

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.93
Transmembrane Helix	37	57	0.87
Cytoplasmic	58	65	0.81
Transmembrane Helix	66	87	0.93
Non-Cytoplasmic	88	98	0.72
Transmembrane Helix	99	118	0.87
Cytoplasmic	119	125	0.86
Transmembrane Helix	126	145	0.93
Non-Cytoplasmic	146	151	0.70
Transmembrane Helix	152	167	0.92
Cytoplasmic	168	177	0.88
Transmembrane Helix	178	198	0.90
Non-Cytoplasmic	199	214	0.87
Transmembrane Helix	215	236	0.90
Cytoplasmic	237	273	0.95