YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADA1D_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRDILSVT FEGPRSSSST GGSGAGGGAG TVGPEGGAVG GVPGATGGGA VVGTGSGEDN  60
   61 QSSTGEPGAA ASGEVNGSAA VGGLVVSAQG VGVGVFLAAF ILTAVAGNLL VILSVACNRH 120
  121 LQTVTNYFIV NLAVADLLLS AAVLPFSATM EVLGFWAFGR TFCDVWAAVD VLCCTASILS 180
  181 LCTISVDRYV GVRHSLKYPA IMTERKAAAI LALLWAVALV VSVGPLLGWK EPVPPDERFC 240
  241 GITEEVGYAI FSSVCSFYLP MAVIVVMYCR VYVVARSTTR SLEAGIKREP GKASEVVLRI 300
  301 HCRGAATSAK GYPGTQSSKG HTLRSSLSVR LLKFSREKKA AKTLAIVVGV FVLCWFPFFF 360
  361 VLPLGSLFPQ LKPSEGVFKV IFWLGYFNSC VNPLIYPCSS REFKRAFLRL LRCQCRRRRR 420
  421 RLWAVYGHHW RASTGDARSD CAPSPRIAPP GAPLALTAHP GAGSADTPET QDSVSSSRKP 480
  481 ASALREWRLL GPLQRPTTQL RAKVSSLSHK IRSGARRAET ACALRSEVEA VSLNVPQDGA 540
  541 EAVICQAYEP GDYSNLRETD I

Type	Start	End	Confidence
Cytoplasmic	1	20	0.80
Transmembrane Helix	21	42	0.68
Non-Cytoplasmic	43	91	0.83
Transmembrane Helix	92	116	0.86
Cytoplasmic	117	126	0.82
Transmembrane Helix	127	148	0.90
Non-Cytoplasmic	149	165	0.85
Transmembrane Helix	166	186	0.96
Cytoplasmic	187	206	0.91
Transmembrane Helix	207	229	0.92
Non-Cytoplasmic	230	248	0.94
Transmembrane Helix	249	272	0.89
Cytoplasmic	273	342	0.97
Transmembrane Helix	343	362	0.95
Non-Cytoplasmic	363	379	0.84
Transmembrane Helix	380	399	0.63
Cytoplasmic	400	561	0.68