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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CAD17_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSAQLHFLC LLTLYLTGAY GQEGKFSGPL KPMTFSIFEG QEPSQIIFQF KANPPAVTFE  60
   61 LTGETDGIFK IEKDGLLYHT RVLDRETRAV HHLQLAALDS QGAIVDGPVP IIIEVKDIND 120
  121 NRPTFLQTKY EGSVRQNSRP GKPFMYVNAT DLDDPATPNG QLFYQIVIQL PKINNVMYFQ 180
  181 IDNKTGAISL TPEGSQVLDP IKNPYYNLVV SVKDMGGQNE NSFSDTTSVD ITVRENIWKA 240
  241 PEPVEIRENL TDPHPIKITQ VQWNDPGAHY SLINKEKLPQ FPFSIDQEGN IYVTQPLDRE 300
  301 EKDSHVFFAT AKDENGKPLA YPLEIRVKVI DINDNPPTCL SQVTVFEVQE NEVLGSSIGI 360
  361 FAAHDMDEAN NINSILKYRL VDQTPKVPSD ELFLIDEYGG KVQLGKRSLK KQDSPQYNLT 420
  421 VEVSDIDFKT LCSLQVNVID INDQIPIFER SDYGSKTLSE DTAIGSTILI IQATDDDEPF 480
  481 TGSSKILYKI VQGDTEGRLE VVTDPMTNTG YVKIRKPLDF ETEPVTSIVF KAENPEPLVN 540
  541 GIEYNASSFA SFELTVTDVN EVPVFPQQIF QANVSEDTAI GTKVGTVTAR DPEGLTVSYS 600
  601 LKDNKRGWLK IDSVTGDIFS TAPLDRETES VYRVQVVATE VGGSSLSSTA YFHLVLMDVN 660
  661 DNPPRLAKDY TGLFFCHPLS APGSLIFEAT DDDQQSVRRP KFTFALGRES LQSDWEVSKI 720
  721 NGTHARLSTK HTRFEEQVYD IPILINDGGQ PPMEGIVSLS VTFCQCVDGS CFRPAGNQVG 780
  781 IPTVGMAVGI LLTTFLVIGI ILAVVFIRMR KDKVEDPQSP ENKPLRS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle