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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CADH6_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTYRYFLLL FWVGQPYPTF SNPLSKRTSG FPAKRRALEL SANSRNELSR SKRSWMWNQF  60
   61 FLLEEYTGSD YQYVGKLHSD QDRGDGSLKY ILSGDGAGDL FIINENTGDI QATKRLDREE 120
  121 KPVYILRAQA INRRTGRPVE PESEFIIKIH DINDNEPIFT KDVYTATVPE MADVGTFVVQ 180
  181 VTATDADDPT YGNSAKVVYS ILQGQPYFSV ESETGIIKTA LLNMDRENRE QYQVVIQAKD 240
  241 MGGQMGGLSG TTTVNITLTD VNDNPPRFPQ STYQFKTPES SPPGTPIGRI KASDADVGEN 300
  301 AEIEYSITDG EGHDMFDVIT DQETQEGIIT VKKLLDFEKK RVYTLKVEAS NPHIEPRFLY 360
  361 LGPFKDSATV RIVVDDVDEP PVFSKPAYIL QIREDAQINT TIGSVAAQDP DAARNPVKYS 420
  421 VDRHTDMDRI FNIDSGNGSI FTSKLLDRET LLWHNITVIA TEINNPKQSS RVPLYIKVLD 480
  481 VNDNAPEFAE FYETFVCEKA KADQLIQTLH AVDKDDPYSG HQFSFSLAPE AASGSNFTIQ 540
  541 DNKDNTAGIL TRKNGYNRHE MSTYLLPVVI SDNDYPVQSS TGTVTVRVCA CDHHGNMQSC 600
  601 HAEALIHPTG LSTGALVAIL LCIVILLVTV VLFAALRRQR KKEPLIISKE DIRDNIVSYN 660
  661 DEGGGEEDTQ AFDIGTLRNP KPWRQQSRRD MVPEALFLPR RTPTARDNTD VRDFISQRLR 720
  721 KMNTDPTAPP YDSLATYAYE GTGSVADSLS SLESVTTDGD QDYGYLSDWG PRFKKLADMY 780
  781 GGMDSDKDS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle