YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34861364, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.99
Transmembrane Helix	59	81	0.89
Non-Cytoplasmic	82	110	0.92
Transmembrane Helix	111	129	0.87
Cytoplasmic	130	136	0.63
Transmembrane Helix	137	155	0.86
Non-Cytoplasmic	156	160	0.69
Transmembrane Helix	161	180	0.91
Cytoplasmic	181	216	0.84
Transmembrane Helix	217	239	0.84
Non-Cytoplasmic	240	289	0.81
Transmembrane Helix	290	311	0.90
Cytoplasmic	312	342	0.82
Transmembrane Helix	343	367	0.86
Non-Cytoplasmic	368	374	0.76
Transmembrane Helix	375	398	0.89
Cytoplasmic	399	404	0.68
Transmembrane Helix	405	425	0.92
Non-Cytoplasmic	426	432	0.71
Transmembrane Helix	433	453	0.89
Cytoplasmic	454	469	0.68
Transmembrane Helix	470	489	0.88
Non-Cytoplasmic	490	494	0.65
Transmembrane Helix	495	514	0.88
Cytoplasmic	515	598	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEPPLYPV AGVAGPQGDE DRLGVHDGPE APLDELVGAY PNYNEEEEER RYYRRKRLGV  60
   61 VKNVLAASTG GTLTYGVYLG LLQMQLILHY DETYREVKYG NMGLPDIDSK MLMGINVTPI 120
  121 AALLYTPVLI RFFGTKWMMF LAVGIYALFV STNYWERYYT LVPSAVALGM AIVPLWASMG 180
  181 NYITRMSQKY YEYSHYKEQD EQGPQQRPPR GSHAPYLLVF QAIFYSFFHL SFACAQLPMV 240
  241 YFLNHYLYDL NHTLFNVKSC GTKSYGILNG FNKTVLRTLP RSRNLIVVES VLMAVAFLAM 300
  301 LLVLGLCGAA YRPTEEIDLR SVGWGNIFQL PFKHVRDFRL RHLVPFFIYS GFEVLFACTG 360
  361 FTLGYGVCSM GLERLAYLLI AYSLGASAAS VLGLLGLWLP RSVPLVAGAG LHLLLTLSLF 420
  421 FWAPAPRVLQ HSWIFYFVAA LWGVGSALNK TGLSTLLGIL YEDKERQDFI FTIYHWWQAV 480
  481 AIFVVYLGSS LPMKAKLAVL LVTLVAAATS YLWMENKLQQ GLVPRQPRIP KPQHKVRGYR 540
  541 YLEEDNSDES DVEGEQGQGD CAEEEAPQAG PLGAEPAGPC RRPCPYEQAL GGDGPEEQ