YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CMLO6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSYHICEYQ DSDYKSVVDV FTKGAEEYIP STFRHLLLLP RTLLLLLGVS LALVLVSGSW  60
   61 LLAVVCIFFL LPFLWFLAGQ PWKNYVSKCL HTDMADITKS YLSDRGSGFW VAESGEQVVG 120
  121 TVGALPVKEP PSGRKQLQLF HLAVSSQHRG QGIAKALVRT VLQFARDQGY TDVVLETSTM 180
  181 QIGAVTLYLG MGFQKTGQYF PSMLWRLVGI RFVQLNYSFP SA

Type	Start	End	Confidence
Cytoplasmic	1	36	0.90
Transmembrane Helix	37	56	0.76
Non-Cytoplasmic	57	58	0.39
Transmembrane Helix	59	79	0.81
Cytoplasmic	80	222	0.53