YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1QB_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQWSEILT PLLLLLLGLL HVSWAQSSCT GSPGIPGVPG IPGVPGSDGK PGTPGIKGEK  60
   61 GLPGLAGDHG ELGEKGDAGI PGIPGKVGPK GPVGPKGAPG PPGPRGPKGG SGDYKATQKV 120
  121 AFSALRTVNS ALRPNQAIRF EKVITNVNDN YEPRSGKFTC KVPGLYYFTY HASSRGNLCV 180
  181 NIVRGRDRDR MQKVLTFCDY AQNTFQVTTG GVVLKLEQEE VVHLQATDKN SLLGVEGANS 240
  241 IFTGFLLFPD MDV

Type	Start	End	Confidence
Signal Peptide	1	25	0.99
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	253	0.99