YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCUP_RAT
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGLGLQNFPE LKNDTFLRAA WGEETDYTPV WCMRQAGRYL PEFRETRAAQ DFFSTCRSPE  60
   61 ACCELTLEPV RRFPLDAAII FSDILVVPQA LAMEVTMVPG KGPSFPEPLR EERDLERLRD 120
  121 PAAVASELGY VFQAITLTRQ QLAGRVPLIG FAGAPWTLMT YMVEGGSFKT MAQAKRWLYQ 180
  181 KPVASHKLLG ILTHALVPYL IGQVAAGAQA LQLFESHAGH LGSELFSKFA LPYIRDVAKR 240
  241 VKAGLQKAGL TRMPMIIFAK DGHFALEELA QAGYEVVGLD WTVAPKKARE PVGKTVTLQG 300
  301 ELDPCALYAS EEEIGRLVQQ MLNDFGPQRY IANLGHGLYP DMDPEHVGAF LDAVHKHSRL 360
  361 LRQN

Type	Start	End	Confidence
Non-Cytoplasmic	1	147	0.63
Transmembrane Helix	148	163	0.56
Cytoplasmic	164	187	0.43
Transmembrane Helix	188	206	0.53
Non-Cytoplasmic	207	364	0.83