YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHD_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPVPTLGL LAALVVCGSW GLNEEQRLIQ HLFEEKGYNK ELRPVARKED IVDVALSLTL  60
   61 SNLISLKEVE ETLTTNVWID HAWIDSRLQW NANEFGNITV LRLPSDMVWL PEIVLENNND 120
  121 GSFQISYACN VLVSDSGHVT WLPPAIFRSS CPISVTYFPF DWQNCSLKFS SLKYTAKEIR 180
  181 LSLKQEEEDN RSYPIEWIII DPEGFTENGE WEIVHRAAKV NVDPSVPMDS TNHQDVTFYL 240
  241 IIRRKPLFYI INILVPCVLI SFMINLVFYL PGDCGEKTSV AISVLLAQSV FLLLISKRLP 300
  301 ATSMAIPLVG KFLLFGMVLV TMVVVICVIV LNIHFRTPST HVLSEGVKKF FLETLPKLLH 360
  361 MSRPEEEDPG PRALIRRTSS LGYISKAEEY FSLKSRSDLM FEKQSERHGL ARRLTTARKP 420
  421 PASSEQVQQE LFNEMKPAVD GANFIVNHMR DQNSYNEEKD NWNQVARTVD RLCLFVVTPV 480
  481 MVVGTAWIFL QGVYNQPPPQ PFPGDPFSYD EQDRRFI

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	247	0.98
Transmembrane Helix	248	269	0.96
Cytoplasmic	270	277	0.86
Transmembrane Helix	278	299	0.87
Non-Cytoplasmic	300	311	0.81
Transmembrane Helix	312	333	0.94
Cytoplasmic	334	471	0.97
Transmembrane Helix	472	493	0.88
Non-Cytoplasmic	494	517	0.96