YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRH2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPNGTVHSC CLDSMALKVT ISVVLTTLIL ITIAGNVVVC LAVSLNRRLR SLTNCFIVSL  60
   61 AATDLLLGLL VLPFSAIYQL SFTWSFGHVF CNIYTSLDVM LCTASILNLF MISLDRYCAV 120
  121 TDPLRYPVLV TPVRVAISLV FIWVISITLS FLSIHLGWNS RNGTRGGNDT FKCKVQVNEV 180
  181 YGLVDGLVTF YLPLLIMCVT YYRIFKIARE QAKRINHISS WKAATIREHK ATVTLAAVMG 240
  241 AFIICWFPYF TAFVYRGLRG DDAINEAVEG IVLWLGYANS ALNPILYAAL NRDFRTAYQQ 300
  301 LFHCKFASHN SHKTSLRLNN SLLPRSQSRE GRWQEEKPLK LQVWSGTELT HPQGNPIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	45	0.87
Cytoplasmic	46	54	0.84
Transmembrane Helix	55	77	0.91
Non-Cytoplasmic	78	92	0.79
Transmembrane Helix	93	114	0.87
Cytoplasmic	115	132	0.87
Transmembrane Helix	133	156	0.87
Non-Cytoplasmic	157	186	0.94
Transmembrane Helix	187	205	0.96
Cytoplasmic	206	230	0.94
Transmembrane Helix	231	250	0.96
Non-Cytoplasmic	251	269	0.86
Transmembrane Helix	270	290	0.78
Cytoplasmic	291	358	0.84