YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLP1R_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	143	0.99
Transmembrane Helix	144	167	0.93
Cytoplasmic	168	177	0.84
Transmembrane Helix	178	196	0.92
Non-Cytoplasmic	197	238	0.83
Transmembrane Helix	239	260	0.77
Cytoplasmic	261	267	0.79
Transmembrane Helix	268	287	0.95
Non-Cytoplasmic	288	307	0.92
Transmembrane Helix	308	330	0.92
Cytoplasmic	331	348	0.91
Transmembrane Helix	349	371	0.78
Non-Cytoplasmic	372	387	0.77
Transmembrane Helix	388	406	0.85
Cytoplasmic	407	463	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTPSLLRL ALLLLGAVGR AGPRPQGATV SLSETVQKWR EYRHQCQRFL TEAPLLATGL  60
   61 FCNRTFDDYA CWPDGPPGSF VNVSCPWYLP WASSVLQGHV YRFCTAEGIW LHKDNSSLPW 120
  121 RDLSECEESK QGERNSPEEQ LLSLYIIYTV GYALSFSALV IASAILVSFR HLHCTRNYIH 180
  181 LNLFASFILR ALSVFIKDAA LKWMYSTAAQ QHQWDGLLSY QDSLGCRLVF LLMQYCVAAN 240
  241 YYWLLVEGVY LYTLLAFSVF SEQRIFKLYL SIGWGVPLLF VIPWGIVKYL YEDEGCWTRN 300
  301 SNMNYWLIIR LPILFAIGVN FLVFIRVICI VIAKLKANLM CKTDIKCRLA KSTLTLIPLL 360
  361 GTHEVIFAFV MDEHARGTLR FVKLFTELSF TSFQGFMVAV LYCFVNNEVQ MEFRKSWERW 420
  421 RLERLNIQRD SSMKPLKCPT SSVSSGATVG SSVYAATCQN SCS