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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6164831
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLMFTLLL LFGFLRIRTD GXRLRQEDFP PKXVEQPSEV IVSKGKPNTP NWKQKGRPFP  60
   61 TIGKVQRMVK PGWDKTKDDS KVTQGCLLPS GSLFFLRIVH GRRSKPDEGT YVCVARNYLG 120
  121 EAVSRNASLE VALLRDDFRQ NPTDVVVAAG EPAILECQPP RGHPEPTIYW KKDKVRIDEK 180
  181 EERISIRGGK LMISNTRKSD AGMYTCVGTN MVGERDSDPA ELTVFERPTF LRRPINQVVL 240
  241 EDEPAEFRCQ VQGDPQPTVR WKKDDADLPR GRYDIKDDYT LRIKKAISAD EGTYVCIAEN 300
  301 RVGKVEASAT LTVRAPPQFV VRPRDQIVAQ GRTVTFPCET KGNPQPAVFW QKEGSQNLLF 360
  361 PNQPQQPNSR CSVSPTGDLT ITNIQRSDAG YYICQALTVA GSILAKAQLE VTDVLTDRPP 420
  421 PIILQGPINQ TLAVDGTALL KCKATGPLPV ISWLKEGFTF LGRDPRATIQ DQGTLQIKNL 480
  481 RISDTGTYTC VATSSSGETS WSAVLDVTES GATISKNYDT NDLPGPPSKP QVTDVTKNSV 540
  541 TLSWQTGTPG VLPASAYIIE AFSQSVSNSW QTVANHVKTT LYTVRGLRPN TIYLFMVRAI 600
  601 NPQGLSDPSP MSDPVRTQDI SPPAQGVDHR QVQKELGDVT VRLHNPVVLT PTTVQVTWTV 660
  661 DRQPQFIQGY RVMYRQTSGL QASTVWQNLD AKVPTERSAV LVNLKKGVTY EIKVRPYFNE 720
  721 FQGMDSESKT IRTTEEAPSA PPQSVTVLTV GSHNSTSISV SWDPPPADHQ NGIIQEYKIW 780
  781 CLGNETRFHI NKTVDATIRS VVIGGLFPGI QYRVEVAAST SAGVGVKSEP QPIIIGGRNE 840
  841 VVITENNNSI TEQITDVVKQ PAFIAGIGGA CWVILMGFSI WLYWRRKKRK GLSNYAVTFQ 900
  901 RGDGGLMSNG SRPGLLNTGD PNYPWLADSW PATSLPVNNS NSGPNEIGNF GRGDVLPPVP 960
  961 GQGDKTATML SDGAIYSSID FTTKTTYNSS SQITQATPYA TTQILHSNSI HELAVDLPDP1020
 1021 QWKSSVQQKS DLMGFAYSLP DQNKGNNAYF TSLTTDWLRD 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle